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Report for CCDS1885.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1885.1 Public Homo sapiens 2 PNO1 24 110 108 CCDS HistoryNCBI Gene:56902Re-query CCDS DB by CCDS ID:1885.1Re-query CCDS DB by GeneID:56902See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1885.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000263657.7 ENSP00000263657.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000263657.7Link to Ensembl Protein Viewer:ENSP00000263657.2Re-query CCDS DB by Nucleotide ID:ENST00000263657Re-query CCDS DB by Protein ID:ENSP00000263657
Original member Current member NCBI NM_020143.4 NP_064528.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020143.4Link to Protein Sequence:NP_064528.1Re-query CCDS DB by Nucleotide ID:NM_020143Re-query CCDS DB by Protein ID:NP_064528Link to BLAST:NP_064528.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064528.1 252 Q9NRX1 252 100% 0 0

Chromosomal Locations for CCDS 1885.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 68157935 68158141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68158380 68158529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68161683 68161766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68162265 68162325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68162546 68162663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68173347 68173417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 68174735 68174802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (759 nt):
ATGGAATCCGAAATGGAAACGCAGAGCGCCAGGGCAGAGGAGGGCTTTACCCAGGTCACCCGCAAGGGTG
GCCGACGGGCGAAGAAACGACAGGCTGAACAGCTGTCCGCAGCAGGAGAGGGCGGGGATGCGGGCCGCAT
GGACACAGAGGAGGCCAGGCCGGCGAAGAGGCCCGTCTTCCCACCCCTCTGTGGGGACGGGCTCCTGAGT
GGGAAAGAAGAAACAAGGAAAATTCCAGTCCCAGCTAACAGATACACACCATTGAAAGAAAACTGGATGA
AGATATTTACTCCTATTGTGGAACATTTGGGACTTCAGATACGCTTTAACTTGAAATCAAGGAATGTAGA
AATCAGGACTTGTAAAGAAACCAAGGATGTTAGTGCTCTGACAAAAGCAGCTGATTTTGTGAAAGCTTTT
ATTCTCGGCTTTCAGGTGGAGGATGCACTTGCCCTCATCAGGTTGGATGACCTCTTCCTAGAGTCTTTTG
AAATTACAGATGTTAAACCCCTAAAGGGAGACCATCTATCCAGGGCAATAGGAAGAATCGCTGGCAAAGG
AGGAAAAACCAAATTCACCATAGAGAATGTGACACGGACAAGGATAGTTTTGGCTGATGTGAAAGTTCAC
ATCCTTGGCTCCTTCCAAAATATCAAGATGGCAAGAACTGCCATTTGCAACCTAATCTTGGGAAATCCTC
CTTCCAAGGTTTATGGCAATATTCGAGCTGTGGCTAGCAGATCAGCAGATCGATTCTGA

Translation (252 aa):
MESEMETQSARAEEGFTQVTRKGGRRAKKRQAEQLSAAGEGGDAGRMDTEEARPAKRPVFPPLCGDGLLS
GKEETRKIPVPANRYTPLKENWMKIFTPIVEHLGLQIRFNLKSRNVEIRTCKETKDVSALTKAADFVKAF
ILGFQVEDALALIRLDDLFLESFEITDVKPLKGDHLSRAIGRIAGKGGKTKFTIENVTRTRIVLADVKVH
ILGSFQNIKMARTAICNLILGNPPSKVYGNIRAVASRSADRF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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