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Report for CCDS18568.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18568.1 Public Mus musculus 4 Lao1 23 108 98 CCDS HistoryNCBI Gene:100470Re-query CCDS DB by CCDS ID:18568.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18568.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058651.4 ENSMUSP00000062834.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058651.4Link to Ensembl Protein Viewer:ENSMUSP00000062834.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000058651Re-query CCDS DB by Protein ID:ENSMUSP00000062834
Original member Current member NCBI NM_133892.4 NP_598653.3 Accepted alive Link to Nucleotide Sequence:NM_133892.4Link to Protein Sequence:NP_598653.3Re-query CCDS DB by Nucleotide ID:NM_133892Re-query CCDS DB by Protein ID:NP_598653Link to BLAST:NP_598653.3

Chromosomal Locations for CCDS 18568.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 118961999 118962029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118963610 118963824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118964180 118964292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118965244 118965445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118967095 118967163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118967353 118967489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 118967752 118968556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGAGTTTCAGGACCATGGCCAAGAAGAGTGGAATCCTTGTTTGGGGGATCCTGCTCTGCGTCTCCAGCT
GTCTTGCCCTCTATGAGAACCTTGTCAAGTGTTTCCAGGATCCCGATTATGAGGCCTTCCTTCTCATAGC
CCAGAATGGGCTCCATACCTCCCCACTGTCTAAGCGTGTGGTGGTAGTGGGAGCTGGCATGGCAGGCCTA
GTGGCAGCTAAGACCCTACAGGATGCTGGTCACGAGGTAACCATCTTGGAGGCCAGCAACCACATCGGAG
GTAGGGTGGTCACACTCAGAAACAAGGAAGAAGGCTGGTACTTAGAACTTGGACCAATGCGAATCCCAGA
AAGCCACAAGCTAATCCACACCTATGTCCAGAAGCTTGGCCTGAAACTGAATAAGTTCCACCAGTATGAT
AGCAACACCTGGTACCTACTCAATGGACAACGCTATCGTGCCTCAGAAGTCATGGCTAACCCAGGAATCT
TGGGCTACCCCCTGAGGCCCTCAGAGAAGAACAAAACTGTCACAGACCTGTTCTACCAAGCCATCACTAA
GATCAAACCACATAGGAAGACATCCAACTGCAGCCAGCTGCTCTCCCTTTATGACTCTTACTCCACCAAG
GCTTACCTGATGAAGGAAGGAACGCTGAGCAAAGGGGCCATCGAGATGATCGGGGATATAATGAATGAGA
ATGCTGGATACTATAAGTCCCTCCTGGAGTCTCTGAGGATTGCAAGCATCTTCTCCAAAAGTGACCAATT
TTCAGAGATCACCGGTGGCTTTGACCAACTCCCCAATGGCCTCAGTGCTAGCCTGAAGCCTGGCACCATC
CGTCTGGGGTCCAAAGTAGAAAGAGTGGTGAGAGACGGGCCCAAGGTTAAGGTTATGTACCGCACAGATG
GGCCCACCTCTGCACTGCACAAACTCACTGCGGATTACGCCATCATCACTGCCTCAGCCAAGGCCACTCG
CCTCATCACCTTCCAGCCACCTCTGTCCCGAGAGAAAACACATGCCCTGCGCTCCGTTCATTACACCAGT
GCCACCAAGGTGGTTTTAGTGTGCAACGAACGCTTCTGGGAACAAGATGGCATCCGGGGCGGCTACTCCA
TCACTGACCGACCCTCCCGCTTCATTTACTATCCCAGCCACAGCCTGCCAGGCGGCAAGGGAGTCCTGCT
GGCCTCTTTCACTGTGGGTGATGATTCCTCCTTCTTTGCTGCCCTGAAGCCCAACCAGGTGGTCGATGTT
GTGCTGGATGACCTTGCGGCAGTGCACCGCATACCCAAGGAGGAGCTAAAGCGCATGTGCCCAAAGTCAG
CGATCAAGCACTGGTCTCTAGACCCCCTCACCATTGGCGCCTTTACAGAGTTCACACCCTACCAATTTGT
AGACTATTCGAAGCAGCTCTCCCAGCCAGAGGGCCGCATCTACTTTGCTGGGGAGCATACCTGCCTGCCG
CACAGCTGGATAGACACCGCCATCAAGTCGGGCATCCGGGCCTCCTGCAACATTCAGGCTGCAGTGGACA
AGGAGGCCACTCGAGGACATACGGCTCTTTAG

Translation (523 aa):
MSFRTMAKKSGILVWGILLCVSSCLALYENLVKCFQDPDYEAFLLIAQNGLHTSPLSKRVVVVGAGMAGL
VAAKTLQDAGHEVTILEASNHIGGRVVTLRNKEEGWYLELGPMRIPESHKLIHTYVQKLGLKLNKFHQYD
SNTWYLLNGQRYRASEVMANPGILGYPLRPSEKNKTVTDLFYQAITKIKPHRKTSNCSQLLSLYDSYSTK
AYLMKEGTLSKGAIEMIGDIMNENAGYYKSLLESLRIASIFSKSDQFSEITGGFDQLPNGLSASLKPGTI
RLGSKVERVVRDGPKVKVMYRTDGPTSALHKLTADYAIITASAKATRLITFQPPLSREKTHALRSVHYTS
ATKVVLVCNERFWEQDGIRGGYSITDRPSRFIYYPSHSLPGGKGVLLASFTVGDDSSFFAALKPNQVVDV
VLDDLAAVHRIPKEELKRMCPKSAIKHWSLDPLTIGAFTEFTPYQFVDYSKQLSQPEGRIYFAGEHTCLP
HSWIDTAIKSGIRASCNIQAAVDKEATRGHTAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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