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Report for CCDS18733.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18733.1 Public Mus musculus 4 Smpdl3b 23 108 98 CCDS HistoryNCBI Gene:100340Re-query CCDS DB by CCDS ID:18733.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 18733.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030709.8 ENSMUSP00000030709.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030709.8Link to Ensembl Protein Viewer:ENSMUSP00000030709.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030709Re-query CCDS DB by Protein ID:ENSMUSP00000030709
Original member Current member NCBI NM_133888.2 NP_598649.1 Accepted alive Link to Nucleotide Sequence:NM_133888.2Link to Protein Sequence:NP_598649.1Re-query CCDS DB by Nucleotide ID:NM_133888Re-query CCDS DB by Protein ID:NP_598649Link to BLAST:NP_598649.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598649.1 456 P58242 456 100% 0 0

Chromosomal Locations for CCDS 18733.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132733394 132733759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132738019 132738152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132738237 132738417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132739629 132739801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132741388 132741531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132745088 132745185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132746478 132746691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132756985 132757045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGACGCTGCTCGGGTGGCTGATATTCCTGGCCCCCTGGGGAGTCGCAGGGGCTCAACTAGGGAGGTTCT
GGCACATCTCCGACCTGCATCTGGACCCCAACTACACCGTATCCAAAGACCCCCTCCAGGTGTGCCCGTC
GGCCGGCTCCCAGCCTGTGCTAAATGCTGGCCCCTGGGGGGACTACCTCTGCGATTCTCCTTGGGCCCTT
ATCAACTCGTCCTTGTATGCCATGAAGGAGATTGAACCAAAGCCTGACTTCATTCTCTGGACAGGGGACG
ACACACCGCACGTCCCCAATGAGAGTCTAGGAGAGGCAGCTGTGCTGGCAATTGTGGAACGCTTGACCAA
CCTCATCAAGGAAGTCTTTCCAGACACTAAAGTCTATGCTGCTCTGGGAAATCATGACTTCCACCCTAAG
AACCAGTTCCCAGCACAGAGCAACCGCATCTATAACCAGGTGGCAGAGCTGTGGAGACCCTGGCTTAGTA
ACGAATCCTACGCTCTCTTCAAAAGAGGTGCCTTCTATTCTGAGAAGTTGCCGGGTCCCAGCAGGGCGGG
GCGAGTTGTGGTCCTCAACACCAATCTGTACTACAGCAACAACGAGCAGACAGCTGGCATGGCTGACCCC
GGCGAGCAGTTCCGGTGGCTGGGAGATGTCCTGAGCAATGCATCTCGGGATGGGGAGATGGTGTATGTTA
TTGGCCACGTGCCCCCGGGGTTCTTTGAGAAGACACAGAACAAGGCCTGGTTCCGAGAGAGCTTCAATGA
GGAGTATCTGAAGGTGATCCAGAAGCACCATCGGGTCATAGCAGGGCAGTTCTTTGGACACCACCATACC
GACAGCTTCCGAATGTTCTATGACAACACAGGTGCCCCCATAAACGTCATGTTTCTCACACCCGGGGTCA
CACCGTGGAAGACCACATTACCTGGAGTGGTCGATGGGGCCAACAATCCAGGGATACGCATTTTCGAGTA
TGATCGAGCCACACTCAACTTGAAGGACTTGGTGACTTACTTCTTGAACCTGAGGCAGGCGAATGTACAA
GAGACCCCACGGTGGGAGCAGGAGTACCGCCTGACGGAGGCCTACCAGGTGCCGGATGCCAGCGTCAGCT
CCATGCACACGGCGCTGACCCGCATTGCCAGTGAGCCTCACATCCTGCAACGTTATTACGTCTATAACTC
GGTCAGCTACAACCATTTGACCTGTGAGGACAGCTGCCGCATCGAGCACGTTTGTGCTATACAACACGTG
GCTTTCAACACTTATGCTACCTGCTTGCATGGTCTTGGTGCCAAGCTGGTGCCTGGTTTCCTGCTCATAC
TGACTCTGCTGCCAAGCCTGCACGTACTGGAGGTGTTATGA

Translation (456 aa):
MTLLGWLIFLAPWGVAGAQLGRFWHISDLHLDPNYTVSKDPLQVCPSAGSQPVLNAGPWGDYLCDSPWAL
INSSLYAMKEIEPKPDFILWTGDDTPHVPNESLGEAAVLAIVERLTNLIKEVFPDTKVYAALGNHDFHPK
NQFPAQSNRIYNQVAELWRPWLSNESYALFKRGAFYSEKLPGPSRAGRVVVLNTNLYYSNNEQTAGMADP
GEQFRWLGDVLSNASRDGEMVYVIGHVPPGFFEKTQNKAWFRESFNEEYLKVIQKHHRVIAGQFFGHHHT
DSFRMFYDNTGAPINVMFLTPGVTPWKTTLPGVVDGANNPGIRIFEYDRATLNLKDLVTYFLNLRQANVQ
ETPRWEQEYRLTEAYQVPDASVSSMHTALTRIASEPHILQRYYVYNSVSYNHLTCEDSCRIEHVCAIQHV
AFNTYATCLHGLGAKLVPGFLLILTLLPSLHVLEVL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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