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Report for CCDS42934.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42934.1 Public Homo sapiens 21 ZBTB21 24 110 108 CCDS HistoryNCBI Gene:49854Re-query CCDS DB by CCDS ID:42934.1Re-query CCDS DB by GeneID:49854See the combined annotation on chromosome 21 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42934.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398505.7 ENSP00000381517.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398505.7Link to Ensembl Protein Viewer:ENSP00000381517.3Re-query CCDS DB by Nucleotide ID:ENST00000398505Re-query CCDS DB by Protein ID:ENSP00000381517
Original member Current member NCBI NM_001098403.2 NP_001091873.1 Accepted alive Link to Nucleotide Sequence:NM_001098403.2Link to Protein Sequence:NP_001091873.1Re-query CCDS DB by Nucleotide ID:NM_001098403Re-query CCDS DB by Protein ID:NP_001091873Link to BLAST:NP_001091873.1
Original member Current member NCBI NM_001320729.2 NP_001307658.1 Accepted alive Link to Nucleotide Sequence:NM_001320729.2Link to Protein Sequence:NP_001307658.1Re-query CCDS DB by Nucleotide ID:NM_001320729Re-query CCDS DB by Protein ID:NP_001307658Link to BLAST:NP_001307658.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091873.1 865 Q9ULJ3-2 865 100% 0 0
NP_001307658.1 865 Q9ULJ3-2 865 100% 0 0

Chromosomal Locations for CCDS 42934.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 21 (NC_000021.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21See the combined annotation on chromosome 21 in Sequence Viewer

Chromosome Start Stop Links
21 41990895 41991889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21
21 41992493 41994095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 21Link to Ensembl Genome Browser on chromosome 21

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2598 nt):
ATGGAGGGATTACTGCATTACATCAACCCTGCACACGCCATTTCTCTCCTAAGTGCCCTGAATGAGGAGC
GTCTCAAAGGACAGCTGTGTGATGTGCTGCTGATTGTTGGAGACCAAAAGTTCCGAGCTCATAAAAACGT
CTTGGCTGCCAGCAGCGAATACTTTCAGAGTTTATTCACAAATAAGGAAAATGAGTCACAAACTGTATTT
CAGCTTGACTTCTGTGAGCCAGATGCTTTTGATAATGTTTTAAACTACATTTATTCTTCCTCTCTATTTG
TTGAGAAGAGCAGCCTTGCTGCTGTGCAAGAACTTGGCTATAGTCTTGGGATTTCCTTTCTGACTAACAT
CGTTTCTAAAACACCTCAAGCCCCCTTTCCAACGTGTCCTAATAGAAAAAAAGTGTTTGTAGAAGATGAT
GAAAACAGTTCTCAAAAGAGAAGTGTCATTGTTTGTCAAAGTAGAAACGAAGCGCAAGGAAAAACTGTTA
GTCAAAATCAACCCGATGTAAGCCATACTTCCCGGCCCTCTCCTAGCATTGCAGTCAAGGCCAATACCAA
TAAGCCACATGTCCCAAAACCAATAGAACCACTTCATAATTTGTCATTAACTGAAAAGAGTTGGCCGAAA
GATAGTTCTGTGGTATATGCAAAGTCTCTTGAGCATTCTGGATCTTTGGATGATCCTAATAGAATCAGTT
TGGTGAAAAGAAATGCAGTGTTGCCTTCAAAGCCTCTGCAAGACAGAGAAGCTATGGATGATAAACCAGG
TGTGAGTGGTCAGCTTCCAAAAGGAAAAGCTCTAGAGCTGGCTTTGAAGAGACCACGGCCACCTGTTTTG
TCTGTTTGTAGCTCATCAGAGACTCCCTATCTATTAAAAGAAACTAACAAAGGAAATGGTCAAGGTGAAG
ATAGAAACTTGTTGTACTATTCAAAGTTAGGCTTAGTGATCCCATCCAGTGGATCTGGTTCTGGAAACCA
AAGCATTGACAGGAGTGGCCCACTTGTTAAGAGTCTCCTCAGACGGTCATTGTCGATGGATAGCCAGGTT
CCTGTCTATTCACCTTCCATAGATTTGAAATCTTCCCAGGGATCATCTTCGGTGTCCAGTGATGCACCAG
GGAATGTGTTGTGTGCTTTATCTCAGAAGTCATCTTTAAAAGATTGTAGTGAAAAAACAGCCCTAGATGA
CAGGCCTCAAGTGCTACAACCGCATCGCCTCAGGTCCTTTAGTGCTTCTCAGTCAACAGACAGGGAGGGA
GCTTCCCCTGTGACTGAGGTGCGCATAAAGACTGAGCCCAGCAGCCCGCTGTCGGACCCCTCGGACATCA
TCCGCGTCACTGTGGGAGATGCGGCAACAACAGCAGCTGCCTCATCTTCGTCGGTCACAAGAGACCTGTC
TCTGAAAACAGAAGATGACCAAAAAGACATGAGCAGACTCCCAGCAAAAAGGAGGTTCCAAGCGGACCGA
AGATTGCCGTTTAAGAAGTTAAAGGTGAATGAGCACGGGTCTCCTGTGTCAGAAGATAATTTTGAGGAAG
GCTCAAGCCCTACTCTCCTTGATGCAGATTTTCCAGATTCTGATTTGAATAAAGACGAATTTGAGCAAGG
AAGCCACGAGCGGCTGTGCCGGAACGCGGCCGTCTGCCCTTACTGCAGCCTCAGGTTTTTCTCGCCCGAG
CTGAAGCAAGAACACGAGAGCAAGTGTGAGTATAAGAAGCTGACCTGCCTCGAGTGCATGCGCACCTTCA
AGTCCTCTTTCAGCATCTGGCGGCACCAGGTTGAAGTCCATAATCAGAACAACATGGCACCCACCGAAAA
CTTTTCTTTGCCCGTTTTGGACCACAATGGTGATGTGACTGGTTCTTCAAGGCCCCAATCCCAGCCTGAG
CCCAACAAAGTAAACCACATCGTCACCACAAAAGACGACAACGTGTTCAGTGATTCTTCAGAACAAGTTA
ACTTCGACTCGGAAGATTCCTCTTGTCTTCCCGAAGACCTTAGTCTTTCCAAGCAACTGAAAATCCAAGT
CAAAGAGGAGCCTGTGGAGGAGGCTGAAGAAGAGGCACCCGAGGCCAGCACAGCCCCCAAAGAAGCGGGT
CCTAGCAAAGAAGCCAGCCTGTGGCCCTGCGAGAAGTGTGGGAAGATGTTCACGGTGCATAAGCAGCTGG
AGCGTCACCAGGAGCTTCTGTGCTCTGTGAAACCATTTATTTGTCACGTGTGCAACAAAGCTTTTCGCAC
TAATTTTCGACTCTGGAGTCACTTCCAATCGCACATGTCTCAGGCTTCAGAGGAATCGGCACATAAGGAA
TCTGAGGTGTGCCCTGTTCCCACAAACTCTCCCTCTCCACCACCTCTGCCACCGCCACCACCACTGCCCA
AGATCCAGCCTCTGGAGCCTGACAGCCCCACAGGCCTGTCCGAAAACCCAACTCCAGCCACAGAAAAACT
GTTTGTGCCCCAAGAATCAGACACCCTTTTTTACCATGCCCCACCCCTTTCAGCAATCACATTTAAAAGA
CAGTTTATGTGTAAACTTTGCCACAGGACATTCAAGACTGCATTTAGTCTTTGGAGTCACGAACAAACAC
ACAATTGA

Translation (865 aa):
MEGLLHYINPAHAISLLSALNEERLKGQLCDVLLIVGDQKFRAHKNVLAASSEYFQSLFTNKENESQTVF
QLDFCEPDAFDNVLNYIYSSSLFVEKSSLAAVQELGYSLGISFLTNIVSKTPQAPFPTCPNRKKVFVEDD
ENSSQKRSVIVCQSRNEAQGKTVSQNQPDVSHTSRPSPSIAVKANTNKPHVPKPIEPLHNLSLTEKSWPK
DSSVVYAKSLEHSGSLDDPNRISLVKRNAVLPSKPLQDREAMDDKPGVSGQLPKGKALELALKRPRPPVL
SVCSSSETPYLLKETNKGNGQGEDRNLLYYSKLGLVIPSSGSGSGNQSIDRSGPLVKSLLRRSLSMDSQV
PVYSPSIDLKSSQGSSSVSSDAPGNVLCALSQKSSLKDCSEKTALDDRPQVLQPHRLRSFSASQSTDREG
ASPVTEVRIKTEPSSPLSDPSDIIRVTVGDAATTAAASSSSVTRDLSLKTEDDQKDMSRLPAKRRFQADR
RLPFKKLKVNEHGSPVSEDNFEEGSSPTLLDADFPDSDLNKDEFEQGSHERLCRNAAVCPYCSLRFFSPE
LKQEHESKCEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTENFSLPVLDHNGDVTGSSRPQSQPE
PNKVNHIVTTKDDNVFSDSSEQVNFDSEDSSCLPEDLSLSKQLKIQVKEEPVEEAEEEAPEASTAPKEAG
PSKEASLWPCEKCGKMFTVHKQLERHQELLCSVKPFICHVCNKAFRTNFRLWSHFQSHMSQASEESAHKE
SEVCPVPTNSPSPPPLPPPPPLPKIQPLEPDSPTGLSENPTPATEKLFVPQESDTLFYHAPPLSAITFKR
QFMCKLCHRTFKTAFSLWSHEQTHN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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