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Report for CCDS18737.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18737.1 Public Mus musculus 4 Stx12 23 108 98 CCDS HistoryNCBI Gene:100226Re-query CCDS DB by CCDS ID:18737.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18737.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030698.4 ENSMUSP00000030698.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030698.4Link to Ensembl Protein Viewer:ENSMUSP00000030698.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000030698Re-query CCDS DB by Protein ID:ENSMUSP00000030698
Original member NCBI NM_133887.4 NP_598648.1 Updated not alive Link to Nucleotide Sequence:NM_133887.4Link to Protein Sequence:NP_598648.1Re-query CCDS DB by Nucleotide ID:NM_133887Re-query CCDS DB by Protein ID:NP_598648
Current member NCBI NM_133887.5 NP_598648.1 Accepted alive Link to Nucleotide Sequence:NM_133887.5Link to Protein Sequence:NP_598648.1Re-query CCDS DB by Nucleotide ID:NM_133887Re-query CCDS DB by Protein ID:NP_598648Link to BLAST:NP_598648.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598648.1 274 Q9ER00 274 100% 0 0

Chromosomal Locations for CCDS 18737.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 132855466 132855558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132857300 132857382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132858419 132858491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132860544 132860649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132862826 132862869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132863159 132863296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132868168 132868267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132871588 132871657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 132884248 132884365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (825 nt):
ATGTCCTACGGTCCCTTAGACATGTATCGGAACCCCGGGCCGTCGGGGCCTCAGCCCCGGGACTTCAACA
GCATCATCCAGACATGCAGTGGCAACATCCAGCGGATCAGCCAAGCCACTGCTCAGATAAAGAATTTGAT
GAGCCAACTTGGAACTAAGCAGGACTCAAGCAAACTCCAGGAAAATTTGCAACAGTTACAGCACTCCACA
AATCAGCTGGCCAAGGAAACAAATGAGTTGCTGAAGGAATTAGGGTCCTTGCCCCTACCCTTGTCTGCAT
CAGAGCAGCGCCAGCAGAAGCTTCAGAAGGAGCGGCTCATGAATGACTTCTCGTCGGCCTTAAACAATTT
CCAGGTTGTGCAGAGAAAGGTATCTGAGAAGGAAAAGGAGAGCATCGCGAGAGCGAGAGCCGGATCTCGT
CTTTCTGCAGAAGACAGGCAGAGAGAAGAGCAGCTCGTCTCATTTGACAGCCATGAAGAGTGGAACCAAA
TGCAGAGCCAGGAGGAAGAGGCGGCCATCACTGAGCAAGACCTGGAACTCATCAAAGAGAGGGAAACGGC
GATTCGGCAGCTGGAGGCTGACATTTTGGATGTCAATCAGATATTTAAAGATTTAGCTATGATGATCCAT
GACCAAGGTGATCTGATCGATAGCATAGAAGCCAATGTGGAAAGCTCGGAGGTGCATGTGGAAAGAGCCA
CTGATCAGCTACAAAGAGCTGCTTACTATCAGAAAAAATCTCGCAAGAAGATGTGTATCCTCGTGCTTGT
CCTGTCAGTGATTGTTACAGTCTTGGTAGTTGTTATCTGGGTTGCTTCTAAATGA

Translation (274 aa):
MSYGPLDMYRNPGPSGPQPRDFNSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHST
NQLAKETNELLKELGSLPLPLSASEQRQQKLQKERLMNDFSSALNNFQVVQRKVSEKEKESIARARAGSR
LSAEDRQREEQLVSFDSHEEWNQMQSQEEEAAITEQDLELIKERETAIRQLEADILDVNQIFKDLAMMIH
DQGDLIDSIEANVESSEVHVERATDQLQRAAYYQKKSRKKMCILVLVLSVIVTVLVVVIWVASK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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