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Report for CCDS38368.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38368.1 Public Mus musculus 2 Gm14305 23 108 98 CCDS HistoryNCBI Gene:100043387Re-query CCDS DB by CCDS ID:38368.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38368.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108981.8 ENSMUSP00000104609.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108981.8Link to Ensembl Protein Viewer:ENSMUSP00000104609.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108981Re-query CCDS DB by Protein ID:ENSMUSP00000104609
Original member Current member EBI ENSMUST00000108983.3 ENSMUSP00000104611.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108983.3Link to Ensembl Protein Viewer:ENSMUSP00000104611.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108983Re-query CCDS DB by Protein ID:ENSMUSP00000104611
Original member Current member NCBI NM_001099327.1 NP_001092797.1 Accepted alive Link to Nucleotide Sequence:NM_001099327.1Link to Protein Sequence:NP_001092797.1Re-query CCDS DB by Nucleotide ID:NM_001099327Re-query CCDS DB by Protein ID:NP_001092797Link to BLAST:NP_001092797.1

Chromosomal Locations for CCDS 38368.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 176711933 176711935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 176718957 176719083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 176719289 176719349 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 176720508 176721813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGGATTTAGTCACCTATGATGACGTGCATGTGAACTTCACTCAGGATGAGTGGGCTTTGCTGGATCCTT
CTCAGAAGAGTCTCTACAAGGGTGTGATGCTAGAGACCTATAAGAATCTCACAGCTATAGGTTACATTTG
GGAAGAACATACGATTGAAGACCATTTTCAAACTTCTCGAAGTCATGGAAGGCATGAAAGAAGTTGTTCT
GCAGAGCAACCCTCTGAGTTTATTCAATGTGGTAAAGCCTTTGCATATGAGAGTGGTAGACAAAGGCATC
AAATTAAACATAATGGAGAGAAACACCATGACTGTAACCAATGTGGTAAGGACTTTAGAACATGGAATGT
CCTGCAAATACATAAGCGAACACATACAGGAGAGAAACCCTATGACTGTAAACAATGTGGTAAAGTCTTT
GCAAGAAGCTGTCATCTCCAAATACATAATCGAACACATGCAGGAGAGAAACAGTATGAATGTAACCAAT
GTGGTAAAGCTTTTAAAAGAAGGATTAACCTCCAAATACATAAGCGAACACATACAGGAGAGAAACCCTA
TGAATGTAACCAATGTGGAAAAGCCTTTGCAAGTAGTGGTGAACTCCAAAACCATAAACGAACACATACA
GGAGAGAAACCCTATGAATGTAAACAATGTGGTAAAGCCTTTTCACAAAGCAGTCATCTCCGAATACATA
AGCGAACACATACAGGAGAGAAACCCTATGAATGTAACCAATGTGGAAAAGCCTTTGCAAGAAGTGGTGA
CCTCCAAAAACATAAACGAACACATACAGGAGAGAAACCCTATGAATGTAAACAATGTGGTAAAGCCTTT
GCACATAGCAGTCATCTCCACAAACATGAGCGAACACATACAGGAGACAAACCCTATGAATGTAAACAGT
GTGGTAAAGCCTTTGCAGTAATCTATACTCTCCAAATGCATAAGCGAACACATACAGGAGAGAAACCCTA
TAAATGTAAACAATGTGGTAAAGCCTTTGCAGTAATCTATACTCTCCAAATGCATAAGCGAACACATACA
GGAGAGAAACCCTATAAATGTAAACAATGTGGTAAAGCCTTTGCAAGAAGCTGTCATCTCCGAATACATA
AGCGAACACATACAGGAGAGAAACCCTATGAATGTAACCAATGTGGTAAAGCCTTTGCAGAAAGCAGTAC
TCTCCAAATCCATAACCGAACACATACAGGAGACAAACCCTATGAATGTAACCAATGTGGTAAAGCTTTT
ATAACAAGGAGAGTCCTCCAAATACATAAGGGAACACATACCGGAGAGAAACCCTATGAATGTAACCAAT
GTGGAAAAGCTTTTGCAAGAAGTTGTGACCTCCAAAAACATAAACGAACTCATACAGGAGAGAAACCCTA
TGAATGTAACCACTGTGGTAAAGCCTTTGCACAAAGCAGTTCTCTCCGAATCCATAAGCGAACACATACA
GGAGAGAGACAATATGAATGTAACTAG

Translation (498 aa):
MDLVTYDDVHVNFTQDEWALLDPSQKSLYKGVMLETYKNLTAIGYIWEEHTIEDHFQTSRSHGRHERSCS
AEQPSEFIQCGKAFAYESGRQRHQIKHNGEKHHDCNQCGKDFRTWNVLQIHKRTHTGEKPYDCKQCGKVF
ARSCHLQIHNRTHAGEKQYECNQCGKAFKRRINLQIHKRTHTGEKPYECNQCGKAFASSGELQNHKRTHT
GEKPYECKQCGKAFSQSSHLRIHKRTHTGEKPYECNQCGKAFARSGDLQKHKRTHTGEKPYECKQCGKAF
AHSSHLHKHERTHTGDKPYECKQCGKAFAVIYTLQMHKRTHTGEKPYKCKQCGKAFAVIYTLQMHKRTHT
GEKPYKCKQCGKAFARSCHLRIHKRTHTGEKPYECNQCGKAFAESSTLQIHNRTHTGDKPYECNQCGKAF
ITRRVLQIHKGTHTGEKPYECNQCGKAFARSCDLQKHKRTHTGEKPYECNHCGKAFAQSSSLRIHKRTHT
GERQYECN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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