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Report for CCDS36368.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36368.1 Public Mus musculus 11 Cd300ld4 23 108 98 CCDS HistoryNCBI Gene:100043123Re-query CCDS DB by CCDS ID:36368.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36368.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100240.2 ENSMUSP00000097811.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100240.2Link to Ensembl Protein Viewer:ENSMUSP00000097811.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000100240Re-query CCDS DB by Protein ID:ENSMUSP00000097811
Original member Current member NCBI NM_001101656.2 NP_001095126.1 Accepted alive Link to Nucleotide Sequence:NM_001101656.2Link to Protein Sequence:NP_001095126.1Re-query CCDS DB by Nucleotide ID:NM_001101656Re-query CCDS DB by Protein ID:NP_001095126Link to BLAST:NP_001095126.1

Chromosomal Locations for CCDS 36368.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 115020728 115020920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115022683 115022845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115024363 115024704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 115026859 115026898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGTGGCAGTTCCCTGCTCTGCTCATCCTCTTCCTCCCAGGCTGCTGCACGGCTCAGGATCCAGTCACAG
GTCCAGAGGAGGTGAGCGGTCAGGAGCAGGGCTCCTTGACAGTGCAGTGCAGATATGACTCAGGCTGGAA
GGATTACAAGAAGTACTGGTGCCGAGGAGCTTATTGGAAATCATGTGAGATTCTCGTTGAAACCGATGCA
TCAGAGCAGTTGGTGAAGGAAAACCGTGTGTCCATCAGGGACGACCAGACAGACTTCATCTTCACAGTGA
CCATGGAAGACCTGAGGATGAGCGATGCTGACATTTACTGGTGTGGAATTACGAAAGCTGGAACTGATCC
CATGTTTAAAGTTAACGTGAACATTGACCCAGAAATTTCAACTACAATCATGACGACGACAGCCACAGTT
CTGCCATCCACAGTTCTGACATCCACGGTTCTGACATCCACAGTTCTGACACCCACAACACCAACCACGG
AGAGCATTGGCACAGAGAACATTGGCCAGGTGACTCAGAACTCTCTCTTCATCTGGTCCCTGTTGAGCAG
CATCTCCTTCTTGCTGATGGTCTTTGTGGTGGTTCCCCTCCTCCTGAGCATGCTCAGTGCTGTTCTCTGG
GTGAACAGGCCTCAGAGACACTATGGGGGAGGTGAAATTGGCCTGGTGGAAACCCATAGATCTGATGCCC
TGGACGGAGAGAAACACTTCCCAGGAGATGAAAAATAA

Translation (245 aa):
MWQFPALLILFLPGCCTAQDPVTGPEEVSGQEQGSLTVQCRYDSGWKDYKKYWCRGAYWKSCEILVETDA
SEQLVKENRVSIRDDQTDFIFTVTMEDLRMSDADIYWCGITKAGTDPMFKVNVNIDPEISTTIMTTTATV
LPSTVLTSTVLTSTVLTPTTPTTESIGTENIGQVTQNSLFIWSLLSSISFLLMVFVVVPLLLSMLSAVLW
VNRPQRHYGGGEIGLVETHRSDALDGEKHFPGDEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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