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Report for CCDS86542.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86542.1 Public Homo sapiens 16 DUXB 24 110 108 CCDS HistoryNCBI Gene:100033411Re-query CCDS DB by CCDS ID:86542.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86542.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000633875.4 ENSP00000491301.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000633875.4Link to Ensembl Protein Viewer:ENSP00000491301.1Re-query CCDS DB by Nucleotide ID:ENST00000633875Re-query CCDS DB by Protein ID:ENSP00000491301
Original member Current member NCBI NM_001351307.2 NP_001338236.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001351307.2Link to Protein Sequence:NP_001338236.1Re-query CCDS DB by Nucleotide ID:NM_001351307Re-query CCDS DB by Protein ID:NP_001338236Link to BLAST:NP_001338236.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001338236.1 345 A0A1W2PPF3 345 100% 0 0

Chromosomal Locations for CCDS 86542.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 75693929 75694525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 75695961 75696115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 75696838 75696943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 75700015 75700169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 75701394 75701418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1038 nt):
ATGAATTTGGAGGGCACTTCAGGTGGCATACTTCAAAAAGAATTCTGGAGAAACAGAATTCAGTATAACC
AGAGTCAAAAGGATATCCTCCAATCATGGTTTCAACATGACCCTTTCCCTGATAAAGCTGCCAGAGAACA
ACTGGCCAAAGAAATTGGGGTTCCAGAATCTAATATTCAGGTTTGGTTTAAAAATTACAGAGTAAAACAG
AGAAAACTGGATTATAAGTGCTTCTCAGAAAAAGATCAAACCCAGGGGCATGACCAGTCCCAGCATCTGA
CTCAAGAATACTTACCTAAAGAAGCCCGACAAAAACAGACATTCATCACATGGACTCAAAAAAACAGGCT
AGTGCAAGCCTTTGAGAGGAACCCATTCCCTGATATTGCTACCAGAAAAAAACTGGCTGAACAAACAGGC
CTGCAGGAATCAAGAATTCAAATGTGGTTTCAGAAACAAAGATCTCTGTACCTCAAGAAGAGCAGAATGG
AGCCCATGAATTTATTGGTAGACGACCCAAATGAGAGACCAGATGCAACTGTTGGGTGGCATCCAATCAA
CCTGTTCCTCCCCACAGACAGCTCTCATTATTTTTCTTGCTCACATTCTTCCAGCGGGCATGAAACTCTT
CCACCTGTTCTTCCTTCAACCCAGGCTCCTTGGGATCCCTTCAGGTTCCATGTGAGCCAAGGACCAAATG
TCATGATCATGCAGCCCACACAGGCTGTGCAGGAAGGAGAGAAGTCTGATCAGCCTCTGATAATTCCGAA
TCACCTCCTGACACTGCCAATTCTGACAAAGGACTTAGATACTCCGACTCCCTTCTGGCTCCAATACCAA
GAAGAACACCAAAATCACAAAGAACACTCTGGCTCGGGAGTACCACAGGTCAAGAGCCATTCTCAGCCTG
AACCTGAGCACAGGGAGCAACAACCTCTAAATCTGGGTCAGTTTGACATATCGAACATTTTGCAAAGGTG
GGACGAGATCTGCCAGGCTCTGCTTGCTGAATGGGACCCTCTCAAAGGGACACACTGA

Translation (345 aa):
MNLEGTSGGILQKEFWRNRIQYNQSQKDILQSWFQHDPFPDKAAREQLAKEIGVPESNIQVWFKNYRVKQ
RKLDYKCFSEKDQTQGHDQSQHLTQEYLPKEARQKQTFITWTQKNRLVQAFERNPFPDIATRKKLAEQTG
LQESRIQMWFQKQRSLYLKKSRMEPMNLLVDDPNERPDATVGWHPINLFLPTDSSHYFSCSHSSSGHETL
PPVLPSTQAPWDPFRFHVSQGPNVMIMQPTQAVQEGEKSDQPLIIPNHLLTLPILTKDLDTPTPFWLQYQ
EEHQNHKEHSGSGVPQVKSHSQPEPEHREQQPLNLGQFDISNILQRWDEICQALLAEWDPLKGTH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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