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Report for CCDS22478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22478.1 Public Mus musculus 8 Gadd45gip1 23 108 98 CCDS HistoryNCBI Gene:102060Re-query CCDS DB by CCDS ID:22478.1Re-query CCDS DB by GeneID:102060See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22478.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036734.5 ENSMUSP00000037783.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036734.5Link to Ensembl Protein Viewer:ENSMUSP00000037783.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000036734Re-query CCDS DB by Protein ID:ENSMUSP00000037783
Original member Current member NCBI NM_183358.4 NP_899202.3 Accepted alive Link to Nucleotide Sequence:NM_183358.4Link to Protein Sequence:NP_899202.3Re-query CCDS DB by Nucleotide ID:NM_183358Re-query CCDS DB by Protein ID:NP_899202Link to BLAST:NP_899202.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899202.3 222 Q9CR59 222 100% 0 0

Chromosomal Locations for CCDS 22478.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 84832291 84832640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 84834108 84834426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (669 nt):
ATGGCGGCGCTCGCAATGCGGAGTGGCTATCTCCTGCGGCTCTCTGTGGCTCTGGGTCCCAGGTCCCGCA
GCTACCGTGCGCCCCCGCCCCCGCGCCGCCGTCCCGGGCCCCACTCGCCAGACCCGGAGAACCTGCTGAC
CCCGCGATGGCAGCTAACGCCCCGCTATGTGGCCAAGCAGTTCGGACGACATGGCGCCATCTCCGGGGTG
CCCCCGGCCTCCCTGTGGCCCACCCCAGAGCAGCTGCGCGAGTTGGAGGCCGAGGAGCAAGAATGGTACC
CGAGCTTAGCGACCATGCAAGAGTCGCTGCGCTTGCAGCAGCAGGCCTTGGAGGCAAGGCGCCAAGCCAG
GGAGCAGCGTATCGCAGAGTGCATGGCCAAGATGCCACAAATGATTGAAAACTGGCGAAAGCAGAAGCGA
GAACGCTGGGAGAAAATTCAGGCTGACAAGGAGCGGAGGGCCCGGTTACAGGCTGAGGCCCAGGAACGCC
TGGGCTACCACGTGGACCCAAGGAGTGCTCGCTTCCAGGAACTATTACAGGACCTAGACAAGCAGCAACG
AAAGCGCCTAAAGGAAGAAAGACAACGACAGAAGAAGGAGGCACGAATTGCTGCTATGGCCTCTGCTGAA
GCCCAGGACTCAGCAGTGTCTGGTGAACCCAGCTCCTGA

Translation (222 aa):
MAALAMRSGYLLRLSVALGPRSRSYRAPPPPRRRPGPHSPDPENLLTPRWQLTPRYVAKQFGRHGAISGV
PPASLWPTPEQLRELEAEEQEWYPSLATMQESLRLQQQALEARRQAREQRIAECMAKMPQMIENWRKQKR
ERWEKIQADKERRARLQAEAQERLGYHVDPRSARFQELLQDLDKQQRKRLKEERQRQKKEARIAAMASAE
AQDSAVSGEPSS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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