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Report for CCDS29355.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29355.1 Public Mus musculus 18 Ark2n 23 108 98 CCDS HistoryNCBI Gene:212163Re-query CCDS DB by CCDS ID:29355.1Re-query CCDS DB by GeneID:212163See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 29355.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000074653.5 ENSMUSP00000074225.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000074653.5Link to Ensembl Protein Viewer:ENSMUSP00000074225.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000074653Re-query CCDS DB by Protein ID:ENSMUSP00000074225
Original member Current member EBI ENSMUST00000237203.1 ENSMUSP00000158108.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237203.1Link to Ensembl Protein Viewer:ENSMUSP00000158108.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237203Re-query CCDS DB by Protein ID:ENSMUSP00000158108
Original member Current member NCBI NM_178670.4 NP_848785.2 Accepted alive Link to Nucleotide Sequence:NM_178670.4Link to Protein Sequence:NP_848785.2Re-query CCDS DB by Nucleotide ID:NM_178670Re-query CCDS DB by Protein ID:NP_848785Link to BLAST:NP_848785.2

Chromosomal Locations for CCDS 29355.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 77635139 77635328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77643068 77643194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77653129 77653296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77673900 77674614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGAAGATGGAGGAGGCAGTGGGAAAAGTTGAAGAACTCATTGAGTCTGCAGCCCCACCAAAAGCATCTG
AACAAGAGACAGCCAAGGAAGAAGATGGCTCTGTAGAACTGGAATCTCAAGTTCAGAAAGATGGTGTAGC
TGACTCTACAGTTCTCTCTTCAATGCCCTGTTTGTTGATGGAACTGAGAAGGGACTCTTCAGAGTCTCAG
TTAGCATCCACAGAGAGTGACAAGCCCACAACTGGCCGAGTTTATGAGAGTGACTCCTCTAATCATTGCA
TGCTTTCCCCTTCCTCTAGTGGCCATTTGGCTGATTCAGATACATTGTCTTCTGTTGAAGAGAATGAACC
CTCGCAAGCAGAAACAACCGTGGAAGGAGATACTTCAGGAGTGTCTGGTGCCACTGTTGGACGAAAGTCT
CGGCGGTCCCGTTCTGAAAGTGAAACATCTACTATGGCTGCCAAGAAAAACCGGCAATCCAGCGATAAGC
AGAATGGCAGAGTCACCAAGGTTAAAGGTCATCGGAGCCAAAAGCACAAGGAGAGGATCAGACTACTGAG
GCAGAAACGGGAGGCAGCTGCAAGGAAGAAGTACAACCTGCTGCAGGACAGTAGTACCAGTGACAGTGAC
CTGACTTGTGACTCAAGCACGAGTTCCTCAGATGATGATGACGAGGTTTCAGGGAGCAGCAAGACAATCA
CTGCAGAGATACCAGATGGACCTCCAGTTGTAGCTCATTATGATATGTCTGACACCAGCTCTGACCCAGA
AGTGATAAATGTGGACAATTTATTGGCGGCTGCAGTAGTTCAAGAGCACAGTAATTCAGTAGGCGGCCAG
AACACAGGAGCTACCTGGAGGACCAGCGAGCTTCTAGAGGCAGGTCATTTGGATCCAGGATTCCTGGCAA
GTGACAAGACATCAGTTGGCAGTGCACCACTTAACGAAGAAATTAATATCGCCTCTTCAGATAGCGAAGT
GGAGATTGTGGGTGTTCAGGAGCACGCAAGGTGTGCTCACCCCCGAGGAGGCGTGATCCAGAGTGTCTCT
TCCTGGAAGCATGGCTCTGGCCCGCAGTATGTGGGCTCCCGGCCCGCACAGTCATGGACTGCTGTGACCC
CGCAGCAGACGTGGGCTTCGCCAGCAGAGGTCGTCGACCTTACCTTGGATGAGGATAGCAGACGCAAATA
CCTACTGTAA

Translation (399 aa):
MKMEEAVGKVEELIESAAPPKASEQETAKEEDGSVELESQVQKDGVADSTVLSSMPCLLMELRRDSSESQ
LASTESDKPTTGRVYESDSSNHCMLSPSSSGHLADSDTLSSVEENEPSQAETTVEGDTSGVSGATVGRKS
RRSRSESETSTMAAKKNRQSSDKQNGRVTKVKGHRSQKHKERIRLLRQKREAAARKKYNLLQDSSTSDSD
LTCDSSTSSSDDDDEVSGSSKTITAEIPDGPPVVAHYDMSDTSSDPEVINVDNLLAAAVVQEHSNSVGGQ
NTGATWRTSELLEAGHLDPGFLASDKTSVGSAPLNEEINIASSDSEVEIVGVQEHARCAHPRGGVIQSVS
SWKHGSGPQYVGSRPAQSWTAVTPQQTWASPAEVVDLTLDEDSRRKYLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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