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Report for CCDS27326.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
27326.1 Public Mus musculus 14 Slitrk6 23 108 98 CCDS HistoryNCBI Gene:239250Re-query CCDS DB by CCDS ID:27326.1Re-query CCDS DB by GeneID:239250See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 27326.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078386.3 ENSMUSP00000077492.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078386.3Link to Ensembl Protein Viewer:ENSMUSP00000077492.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000078386Re-query CCDS DB by Protein ID:ENSMUSP00000077492
Original member Current member NCBI NM_175499.4 NP_780708.1 Accepted alive Link to Nucleotide Sequence:NM_175499.4Link to Protein Sequence:NP_780708.1Re-query CCDS DB by Nucleotide ID:NM_175499Re-query CCDS DB by Protein ID:NP_780708Link to BLAST:NP_780708.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780708.1 840 Q8C110 840 100% 0 0

Chromosomal Locations for CCDS 27326.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 110749751 110752273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2523 nt):
ATGAAGCTGTGGACTTATCTCCTTTATCCATCTCTTCTTGCTTGTCTGTCTCTACAGTCCCAGTCACCAA
TG
CCCTCAGTCAGAGGCTCTTGCGACACTCTTTGTAATTGTGAGGAGAAAGATGGCATAATGATAATAAA
C
TGTGAAGAAAAAGGAATCAATAAATTATCCCAAATCAGTGTGCCACCATCACGACCTTTCCACTTAAGT
TTA
TTAAATAATGGCTTGACAATGCTTCACACGAACGACTTTTCTGGACTTACCAATGCCCTTTCAATAC
AC
CTTGGATTTAACAATATAGCAGACATAGAGACTGGTGCATTTAATGGCCTTGGGCTTCTTAAGCAACT
T
CATATCAATCATAATTCTTTGGAAATTCTTAAAGAGGATACCTTCCATGGTTTGGAGAACCTGGAATTC
TTG
CAGGCTGATAATAATTTCATTACGATAATTGAACCAAGTGCCTTCAGCAAGCTCAACAGGCTAAAGG
TG
TTGATTTTAAATGACAACGCTATTGAGAGTCTTCCTCCAAACATATTTCGATTTGTTCCTTTAACCCA
T
CTAGATCTTCGTGGGAACCAGTTGCAAACATTGCCTTATGTTGGCTTTTTAGAACACATTGGCCGGATA
TTG
GATCTCCAATTGGAGGACAATAAGTGGGCCTGCAATTGTGAATTGTTGCAGCTAAAAAACTGGCTAG
AA
AATATGCCTCCACAATCTATAATTGGTGATGTGATATGCTACAGCCCTCCACCTTTCAAAGGGAGTGT
A
CTGAGTCGCCTGAAAAAGGAATCTTTTTGCCCTACTCCACCAGTATACGAAGAGCATGAGGATCCATCA
GGA
TCTTTGCTGGCCATAACATCTTCAACAAGTGACAGCCGCCTATCAAGCAAGAATACATCCATTTTGA
AA
CAACCTACCAAAGCACCAGGTTTGATACCATACCTTACAAAGCCATCCACTCAGCTTCCAGTACCTTA
T
TGTCCTATCCCTTGCAATTGCAAAGTTCTCTCCCCTTCGGGGCTTCTTATCCACTGTCAGGAGCGCAAT
ATA
GAAAGCTTGTCAGATCTACAGCCTCCTCCACACAACCCTAGAAAGCTGATTCTTGCAGGCAACATCA
TT
CACACCTTAATGAAGTCTGACCTCACAGACTATTTCACTTTGGAAATGCTTCACTTGGGAAACAACCG
C
ATTGAAGTTCTGGAAGAAGGATCGTTTATGAATCTGACACGACTCCAGAAGCTTTATCTCAATGGCAAT
CAT
CTGACCAAACTCAATAAAGGCATGTTCCTTGGTCTCCACAGTCTCGAGTATTTGTATCTTGAGTACA
AT
GCGGTAAAGGAAATATTACCAGGGACCTTCAACCCAATGCCTAAACTGAAAGTTCTTTATTTAAATAA
C
AATCTCCTTCAAGTTTTACCGGCACATATCTTTTTAGGTATTCCTCTAACTAGAGTAAATCTTAAAACA
AAC
CAATTCACCCATTTACCTGTAAGCAACATCTTAGATGACCTTGACTTCCTGATACAGATTGACCTTG
AG
GATAACCCCTGGGACTGCTCTTGTGACTTGGTTGGATTGCAGCAATGGATCCACAAGCTTGGCAAGGG
C
ACCATGACTGATGATATCCTCTGCACTTCCCCAGGGCATCTTGACAAGAAAGAATTAAAAGCCCTCAAC
AGT
GATCTTCTTTGCCCTGGTTTAGTGAATAATCCTTCCATGCCAACCCAGACTACTTATGTTATTGTCA
CT
TCTCCCACAGTGGCGGCAGATACAGCTAGTACACTCTTCAGTTCTCTCACTGATGCTGTGCCCCTGTC
A
GTTCTAATATTAGGACTCCTGATTGTGTTCATAACTATTGTATTCTGTGCCGCGGGGATCGTGGTTTTT
GTC
CTCCACCGTAGGAGAAGATATAAGAAGAAAAAAGTAGAGGAACAACTGAGAGACAACAGTCCTGTAC
AC
TTGCAGTACAGCATGTATGGTCATAAAACAACCCACCATACAACGGAAAGACCCTCTTCCTCTCTCTA
T
GAACAACACATGGTGAGCCCAATGGTTCATGTCTACAGAAGTCCATCCTTTGGTCCAAAGCATTTGGAA
GAA
GTTGAGGAAAGAAATGATAAAGAAGGAAATGATGCAAAACATCTTCAAAGGAGCCTGTTAGAACGAG
AA
AATCATTCACCACTCACAGGTTCAAATATGAAATACAAAACTACAGACCAATCAACAGATTTCATATC
C
TTTCAGGATGCAAGCTTATTATATAGGAACATTTTGGAGAAAGAGAGGGAACTTCAGCAACTTGGCATC
ACA
GAGTACCTAAGAAAAAATCTTGCTCAGCTCCAGCCAGAGGTGGAGGTTAACTATCCTGGAGCCCACG
AG
GAGCTAAAATTAATGGAAACGTTGATGTACTCACGACCAAGGAAGGTGTTGGTAGAACAGACTAAAAA
T
GAATACTTTGAGCTCAAAGCTAACTTGCATGCTGAACCCGACTACTTAGAAGTCTTGGAGCAGCAAACA
TAG


Translation (840 aa):
MKLWTYLLYPSLLACLSLQSQSPMPSVRGSCDTLCNCEEKDGIMIINCEEKGINKLSQISVPPSRPFHLS
L
LNNGLTMLHTNDFSGLTNALSIHLGFNNIADIETGAFNGLGLLKQLHINHNSLEILKEDTFHGLENLEF
L
QADNNFITIIEPSAFSKLNRLKVLILNDNAIESLPPNIFRFVPLTHLDLRGNQLQTLPYVGFLEHIGRI
L
DLQLEDNKWACNCELLQLKNWLENMPPQSIIGDVICYSPPPFKGSVLSRLKKESFCPTPPVYEEHEDPS
G
SLLAITSSTSDSRLSSKNTSILKQPTKAPGLIPYLTKPSTQLPVPYCPIPCNCKVLSPSGLLIHCQERN
I
ESLSDLQPPPHNPRKLILAGNIIHTLMKSDLTDYFTLEMLHLGNNRIEVLEEGSFMNLTRLQKLYLNGN
H
LTKLNKGMFLGLHSLEYLYLEYNAVKEILPGTFNPMPKLKVLYLNNNLLQVLPAHIFLGIPLTRVNLKT
N
QFTHLPVSNILDDLDFLIQIDLEDNPWDCSCDLVGLQQWIHKLGKGTMTDDILCTSPGHLDKKELKALN
S
DLLCPGLVNNPSMPTQTTYVIVTSPTVAADTASTLFSSLTDAVPLSVLILGLLIVFITIVFCAAGIVVF
V
LHRRRRYKKKKVEEQLRDNSPVHLQYSMYGHKTTHHTTERPSSSLYEQHMVSPMVHVYRSPSFGPKHLE
E
VEERNDKEGNDAKHLQRSLLERENHSPLTGSNMKYKTTDQSTDFISFQDASLLYRNILEKERELQQLGI
T
EYLRKNLAQLQPEVEVNYPGAHEELKLMETLMYSRPRKVLVEQTKNEYFELKANLHAEPDYLEVLEQQT




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