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Report for CCDS22588.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
22588.1 Public Mus musculus 8 Ces2e 23 108 98 CCDS HistoryNCBI Gene:234673Re-query CCDS DB by CCDS ID:22588.1Re-query CCDS DB by GeneID:234673See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 22588.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034355.10 ENSMUSP00000034355.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034355.10Link to Ensembl Protein Viewer:ENSMUSP00000034355.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000034355Re-query CCDS DB by Protein ID:ENSMUSP00000034355
Original member Current member EBI ENSMUST00000109410.3 ENSMUSP00000105037.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109410.3Link to Ensembl Protein Viewer:ENSMUSP00000105037.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109410Re-query CCDS DB by Protein ID:ENSMUSP00000105037
Original member Current member NCBI NM_001163756.1 NP_001157228.1 Accepted alive Link to Nucleotide Sequence:NM_001163756.1Link to Protein Sequence:NP_001157228.1Re-query CCDS DB by Nucleotide ID:NM_001163756Re-query CCDS DB by Protein ID:NP_001157228Link to BLAST:NP_001157228.1
Original member Current member NCBI NM_172759.3 NP_766347.1 Accepted alive Link to Nucleotide Sequence:NM_172759.3Link to Protein Sequence:NP_766347.1Re-query CCDS DB by Nucleotide ID:NM_172759Re-query CCDS DB by Protein ID:NP_766347Link to BLAST:NP_766347.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001157228.1 559 Q8BK48 559 100% 0 0
NP_766347.1 559 Q8BK48 559 100% 0 0

Chromosomal Locations for CCDS 22588.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 8 (NC_000074.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 104926321 104926396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104927008 104927212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104928728 104928869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104929482 104929615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104929697 104929955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104930666 104930764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104931066 104931206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104931328 104931408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104931842 104931986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104932400 104932537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104932924 104932996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 104933528 104933714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1680 nt):
ATGCCACTATACAAACTTCTTGGATGGCTGAATGCTGTGGCCTGTGGGGTCCTGCTTCTCGTTCTGCATG
TGCAAGGTCAGGACTCAGCCAGCCCCATCAGGAACACACACACAGGCCAGGTGAGAGGCAGCCTTGTCCA
CGTGAAGGACACTGACATCGCTGTTCATACCTTCCTGGGAATCCCCTTTGCCAAGCCTCCTGTAGGACCA
CTGCGCTTTGCACCTCCTGAGGCCCCTGAGCCATGGAGTGGGGTGAGGGATGGGACCTCACATCCAAACA
TGTGTCTACAAAATGACAATTTGATGGGTTCAGAGGATCTGAAGATGATGAACTTGATCCTGCCTCCCAT
CTCTATGTCTGAGGACTGCCTGTATCTCAACATCTATGTACCAGCCCATGCCCATGAGGGTTCTAACCTA
CCTGTGATGGTATGGATCCATGGTGGTGCACTCACTGTTGGCATGGCTTCCATGTATGATGGATCCATGC
TGGCAGCAACTGAGGATGTGGTGGTGGTCGCTATCCAGTACCGCCTGGGTGTTCTGGGATTCTTCAGCAC
TGGAGACCAGCATGCCAAAGGCAACTGGGGATACCTGGACCAAGTGGCTGCCCTTCGTTGGGTCCAGCAA
AACATTGTCCACTTTGGAGGCAACCCTGACCGAGTCACCATTTTTGGAGAGTCAGCAGGTGGCACAAGTG
TGTCTTCACATGTTGTGTCCCCCATGTCCCAGGGACTCTTCCATGGTGCCATCATGGAGAGTGGAGTAGC
TGTGCTCCCTGATCTTATCTCCAGCTCCTCTGAGATGGTTCACAGAATAGTGGCCAATCTATCTGGCTGT
GCAGCTGTGAACTCAGAGACCCTGATGTGCTGCCTAAGAGGCAAGAATGAAGCAGAGATGCTGGCTATTA
ATAAGGTCTTCAAAATCATCCCTGGTGTGGTGGATGGAGAGTTCCTACCCAAGCATCCTCAGGAGCTGAT
GGCCTCTAAGGATTTTCACCCTGTCCCCAGCATCATTGGTATCAACAATGATGAATATGGTTGGATTCTT
CCTACGATCATGGACCCAGCTCAGAAAATAGAGGAAATAACCAGAAAGACCCTGCCAGCTGTTCTAAAAA
GCACAGCCCTAAAAATGATGCTGCCTCCTGAGTGTGGTGACCTGCTAATGGAGGAGTACATGGGGGACAC
TGAGGACCCAGAGACTCTGCAAGCACAGTTCAGAGAGATGAAGGGGGACTTCATGTTCGTGATCCCTGCA
CTACAAGTAGCACATTTTCAACGTTCCCATGCTCCTGTCTACTTCTATGAGTTCCAACATCGACCCAGCT
TCTTCAAGGATTTCAGGCCACCCTATGTGAAGGCTGACCATGGTGATGAAATTTTCCTTGTCTTTGGCTA
CCAGTTCGGTAACATAAAACTTCCTTACACTGAGGAAGAGGAGCAACTAAGCAGAAGGATAATGAAGTAC
TGGGCCAACTTTGCACGGCACGGGAACCCCAACAGTGAGGGTCTACCCTACTGGCCTGTGATGGACCATG
ATGAGCAGTACCTGCAGCTGGACATCCAGCCTTCTGTGGGTCGAGCCCTGAAGGCCAGAAGGCTGCAGTT
CTGGACCAAGACTCTGCCCCAGAAGATCCAGGAGCTAAAGGGGTCTCAGGAGAGGCACAAAGAGTTGTAG

Translation (559 aa):
MPLYKLLGWLNAVACGVLLLVLHVQGQDSASPIRNTHTGQVRGSLVHVKDTDIAVHTFLGIPFAKPPVGP
LRFAPPEAPEPWSGVRDGTSHPNMCLQNDNLMGSEDLKMMNLILPPISMSEDCLYLNIYVPAHAHEGSNL
PVMVWIHGGALTVGMASMYDGSMLAATEDVVVVAIQYRLGVLGFFSTGDQHAKGNWGYLDQVAALRWVQQ
NIVHFGGNPDRVTIFGESAGGTSVSSHVVSPMSQGLFHGAIMESGVAVLPDLISSSSEMVHRIVANLSGC
AAVNSETLMCCLRGKNEAEMLAINKVFKIIPGVVDGEFLPKHPQELMASKDFHPVPSIIGINNDEYGWIL
PTIMDPAQKIEEITRKTLPAVLKSTALKMMLPPECGDLLMEEYMGDTEDPETLQAQFREMKGDFMFVIPA
LQVAHFQRSHAPVYFYEFQHRPSFFKDFRPPYVKADHGDEIFLVFGYQFGNIKLPYTEEEEQLSRRIMKY
WANFARHGNPNSEGLPYWPVMDHDEQYLQLDIQPSVGRALKARRLQFWTKTLPQKIQELKGSQERHKEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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