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Report for CCDS51527.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51527.1 Public Mus musculus 5 Ppat 23 108 98 CCDS HistoryNCBI Gene:231327Re-query CCDS DB by CCDS ID:51527.1Re-query CCDS DB by GeneID:231327See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51527.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000140076.1 ENSMUSP00000120632.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000140076.1Link to Ensembl Protein Viewer:ENSMUSP00000120632.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000140076Re-query CCDS DB by Protein ID:ENSMUSP00000120632
Original member Current member NCBI NM_172146.2 NP_742158.1 Accepted alive Link to Nucleotide Sequence:NM_172146.2Link to Protein Sequence:NP_742158.1Re-query CCDS DB by Nucleotide ID:NM_172146Re-query CCDS DB by Protein ID:NP_742158Link to BLAST:NP_742158.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_742158.1 517 Q8CIH9 517 100% 0 0

Chromosomal Locations for CCDS 51527.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 76915209 76915405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76915945 76916065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76918034 76918255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76919371 76919498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76919756 76919907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76921470 76921542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76922211 76922356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76922455 76922567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76925674 76925880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76926791 76926857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 76950957 76951084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGGAGCTGGAGGAGTTGGGGATCCGCGAGGAATGTGGTGTGTTTGGGTGCATCGCTTCTGGAGACTGGC
CCACGCAGCTAGATGTGCCGCATGTGATCACTCTGGGACTCGTGGGGCTACAGCACCGAGGTCAGGAGAG
CGCTGGTATTGTGACCAGTGATGGGAGTGCAGTGCCTAAATTCAGGGTGCATAAGGGAATGGGTCTTGTA
AACCATGTTTTTACCGAAGACAATTTGAAGAAATTGTATGACTCAAACCTTGGAATCGGACATACGAGGT
ACGCCACCACGGGAAAGTGTGAGCTGGAAAACTGCCAGCCATTCGTAGTTGAGACGCTTCACGGAAAAAT
AGCTGTGGCCCATAACGGGGAACTGGTGAACGCCGCTCGGTTGCGGAAGAAGCTTCTGCGGCAGGGTATT
GGGCTTTCCACGTCCTCTGATAGTGAAATGATTACCCAGTTACTCGCATACACCCCTCCTCAAGAAAAAG
ATGATGCTCCAGACTGGGTAGCAAGAATTAAGAACTTAATGAAAGAAGCGCCCGCAGCATACTCCCTGGT
TATAATGCACAGGGACTTCATTTACGCGGTGCGAGATCCATATGGAAATCGTCCTCTCTGCATCGGGCGT
CTTATGCCAGTCTCTGATGTAAATGACAAAGAGAAAAAATCCTCAGAAACTGAAGGATGGGTGGTGTCCT
CAGAGTCTTGCAGCTTTTTATCCATCGGTGCCAGATATTGCCATGAAGTCAAACCCGGAGAAATTGTAGA
AATATCCAGACATGGTATCAGAACTCTTGATATAATTCCAAGGTCTAACGGAGACCCAGTGGCTTTTTGT
ATTTTTGAATATGTTTATTTTGCAAGACCAGATAGTATGTTTGAAGACCAAATGGTTTATACAGTAAGGT
ACCGGTGTGGTCAGCAGCTGGCAATTGAAGCACCCGTGGAGGCGGACTTGGTTAGCACAGTTCCAGAGTC
TGCTACGCCTGCAGCGCTGGGATATGCAACAAAGTGTGGGCTGCCTTATGTGGAAGTGCTGTGTAAGAAC
CGGTATGTAGGAAGAACCTTCATTCAACCAAACATGAGGTTAAGACAACTCGGTGTTGCAAAGAAGTTTG
GCGTGTTGTCTGACAACTTTAAAGGCAAAAGAATCGTTCTCATAGATGATTCGATTGTGAGGGGCAATAC
TATCTCACCCATCATAAAACTCCTCAAAGAATCCGGTGCAAAAGAGGTGCACATTCGAGTCGCTTCACCA
CCAATAAAATATCCGTGCTTCATGGGAATAAACATTCCTACAAAAGAAGAGCTCATAGCCAATAAGCCAG
AATTTGATTGTCTTGCAGAGTACCTCGGAGCAAACAGCGTTGTGTATCTGTCAGTGGAAGGACTGGTTTC
ATCTGTGCAACAAGAAATAAAATTTAAGAAGCAGAAAGTGAAAAAACATGATATTGCAATTCAAGAAAAT
GGAAATGGTTTGGAATATTTTGAAAAGACGGGACACTGTACAGCTTGCCTCACTGGGCAGTACCCTGTGG
AGCTGGAATGGTAG

Translation (517 aa):
MELEELGIREECGVFGCIASGDWPTQLDVPHVITLGLVGLQHRGQESAGIVTSDGSAVPKFRVHKGMGLV
NHVFTEDNLKKLYDSNLGIGHTRYATTGKCELENCQPFVVETLHGKIAVAHNGELVNAARLRKKLLRQGI
GLSTSSDSEMITQLLAYTPPQEKDDAPDWVARIKNLMKEAPAAYSLVIMHRDFIYAVRDPYGNRPLCIGR
LMPVSDVNDKEKKSSETEGWVVSSESCSFLSIGARYCHEVKPGEIVEISRHGIRTLDIIPRSNGDPVAFC
IFEYVYFARPDSMFEDQMVYTVRYRCGQQLAIEAPVEADLVSTVPESATPAALGYATKCGLPYVEVLCKN
RYVGRTFIQPNMRLRQLGVAKKFGVLSDNFKGKRIVLIDDSIVRGNTISPIIKLLKESGAKEVHIRVASP
PIKYPCFMGINIPTKEELIANKPEFDCLAEYLGANSVVYLSVEGLVSSVQQEIKFKKQKVKKHDIAIQEN
GNGLEYFEKTGHCTACLTGQYPVELEW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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