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Report for CCDS42552.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42552.1 Public Homo sapiens 19 NFKBID 24 110 108 CCDS HistoryNCBI Gene:84807Re-query CCDS DB by CCDS ID:42552.1Re-query CCDS DB by GeneID:84807See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 42552.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396901.5 ENSP00000380109.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396901.5Link to Ensembl Protein Viewer:ENSP00000380109.1Re-query CCDS DB by Nucleotide ID:ENST00000396901Re-query CCDS DB by Protein ID:ENSP00000380109
Original member Current member NCBI NM_001365705.1 NP_001352634.1 Accepted alive Link to Nucleotide Sequence:NM_001365705.1Link to Protein Sequence:NP_001352634.1Re-query CCDS DB by Nucleotide ID:NM_001365705Re-query CCDS DB by Protein ID:NP_001352634Link to BLAST:NP_001352634.1
Original member NCBI NM_139239.3 NP_640332.1 Removed alive Link to Nucleotide Sequence:NM_139239.3Link to Protein Sequence:NP_640332.1Re-query CCDS DB by Nucleotide ID:NM_139239Re-query CCDS DB by Protein ID:NP_640332Link to BLAST:NP_640332.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001352634.1 313 Q8NI38-1 313 100% 0 0

Chromosomal Locations for CCDS 42552.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 35888559 35888612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35889890 35890054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35890374 35890490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35895980 35896128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35896218 35896269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35896392 35896538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35896726 35896831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35896913 35897058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 35897651 35897656 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGGAGGCTGGACCCTGGAGAGTTTCTGCACCCCCTTCAGGACCCCCACAGTTCCCCGCTGTGGTCCCTG
GACCATCGCTGGAGGTGGCCCGAGCTCACATGCTGGCTTTGGGGCCACAGCAGCTGCTGGCCCAGGATGA
GGAGGGGGACACGCTCCTTCACCTGTTTGCGGCTCGGGGGCTGCGCTGGGCGGCATATGCTGCGGCTGAG
GTGCTCCAGGTGTACCGGCGTCTTGACATTCGTGAGCATAAGGGCAAGACCCCTCTCCTGGTGGCGGCTG
CTGCCAACCAGCCCCTGATTGTGGAGGATCTGTTGAACCTGGGAGCAGAGCCCAATGCCGCTGACCATCA
GGGACGTTCGGTCTTGCACGTGGCCGCTACCTACGGGCTCCCAGGAGTTCTCTTGGCTGTGCTTAACTCT
GGGGTCCAGGTTGACCTGGAAGCCAGAGACTTCGAGGGCCTCACCCCGCTCCACACGGCCATCCTGGCCC
TTAACGTTGCTATGCGCCCTTCCGACCTCTGTCCCCGGGTGCTGAGCACACAGGCCCGAGACAGGCTGGA
TTGTGTCCACATGTTGCTGCAAATGGGTGCTAATCACACCAGCCAGGAGATCAAGAGCAACAAGACAGTT
CTGCACTTGGCCGTGCAGGCTGCCAACCCCACTCTGGTTCAGCTGCTGCTGGAGCTGCCCCGGGGAGACC
TGCGGACCTTTGTCAACATGAAGGCCCACGGGAACACAGCCCTCCACATGGCGGCTGCCCTGCCCCCTGG
GCCGGCCCAGGAGGCCATCGTGCGGCACCTGTTGGCAGCTGGGGCGGACCCCACACTGCGCAACCTGGAG
AATGAGCAGCCCGTTCACCTGCTGCGGCCCGGGCCGGGCCCTGAGGGGCTCCGGCAGCTGTTGAAGAGGA
GCCGTGTGGCGCCGCCAGGCCTGTCCTCTTAG

Translation (313 aa):
MEAGPWRVSAPPSGPPQFPAVVPGPSLEVARAHMLALGPQQLLAQDEEGDTLLHLFAARGLRWAAYAAAE
VLQVYRRLDIREHKGKTPLLVAAAANQPLIVEDLLNLGAEPNAADHQGRSVLHVAATYGLPGVLLAVLNS
GVQVDLEARDFEGLTPLHTAILALNVAMRPSDLCPRVLSTQARDRLDCVHMLLQMGANHTSQEIKSNKTV
LHLAVQAANPTLVQLLLELPRGDLRTFVNMKAHGNTALHMAAALPPGPAQEAIVRHLLAAGADPTLRNLE
NEQPVHLLRPGPGPEGLRQLLKRSRVAPPGLSS


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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