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Report for CCDS33644.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33644.1 Public Homo sapiens 22 TRIOBP 24 110 108 CCDS HistoryNCBI Gene:11078Re-query CCDS DB by CCDS ID:33644.1Re-query CCDS DB by GeneID:11078See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 33644.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000407319.7 ENSP00000383913.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407319.7Link to Ensembl Protein Viewer:ENSP00000383913.2Re-query CCDS DB by Nucleotide ID:ENST00000407319Re-query CCDS DB by Protein ID:ENSP00000383913
Original member Current member NCBI NM_138632.2 NP_619538.2 Accepted alive Link to Nucleotide Sequence:NM_138632.2Link to Protein Sequence:NP_619538.2Re-query CCDS DB by Nucleotide ID:NM_138632Re-query CCDS DB by Protein ID:NP_619538Link to BLAST:NP_619538.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_619538.2 431 Q9H2D6-6 431 100% 0 0

Chromosomal Locations for CCDS 33644.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 37746238 37746420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37751772 37751828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37754877 37754984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37755101 37755190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37755550 37755659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37757613 37758138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37759154 37759264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37759417 37759527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1296 nt):
ATGGGCGGATGGAAGGGGCCGGGGCAGCGTCGGGGAAAGGAAGGGCCGGAGGCGCGGCGGCGGGCGGCCG
AGAGGGGCGGCGGCGGCGGCGGCGGCGGGGTTCCCGCGCCGCGGAGCCCGGCCCGAGAGCCGCGTCCACG
TTCCTGCCTCCTGCTCCCGCCGCCCTGGGGCGCCGCCATGACGCCCGATCTGCTCAACTTCAAGAAGGGA
TGGATGTCGATCTTGGACGAGCCTGGAGAGCCTCCCTCCCCCTCGCTCACCACCACCTCTACTTCGCAGT
GGAAGAAACATTGGTTTGTGCTGACAGATTCAAGTCTCAAATATTACAGAGACTCCACTGCTGAGGAGGC
AGATGAGCTGGATGGTGAGATCGACCTGCGTTCCTGCACGGATGTCACTGAGTACGCGGTGCAGCGCAAC
TATGGCTTCCAGATCCACACCAAGGATGCTGTCTATACCTTGTCGGCCATGACCTCAGGCATCCGGCGGA
ACTGGATCGAGGCTCTGAGAAAGACCGTACGTCCAACTTCAGCCCCAGATGTCACCAAGCTCTCGGACTC
TAACAAGGAGAACGCGCTGCACAGCTACAGCACCCAGAAGGGCCCCCTGAAGGCAGGGGAGCAGCGGGCG
GGCTCTGAGGTCATCAGCCGGGGTGGCCCTCGGAAGGCGGACGGGCAGCGTCAGGCCTTGGACTACGTGG
AGCTCTCGCCGCTGACCCAGGCTTCCCCGCAGCGGGCCCGCACCCCAGCCCGCACTCCTGACCGCCTGGC
CAAGCAGGAGGAGCTGGAGCGGGACCTGGCCCAGCGCTCCGAGGAGCGGCGCAAGTGGTTTGAGGCCACA
GACAGCAGGACCCCAGAGGTGCCTGCTGGTGAGGGGCCGCGCCGGGGCCTGGGTGCCCCCCTGACTGAGG
ACCAGCAAAACCGGCTTAGTGAGGAGATCGAGAAGAAGTGGCAGGAGCTGGAGAAGCTGCCCCTGCGGGA
GAATAAGCGGGTGCCCCTCACTGCCCTGCTCAACCAAAGCCGCGGAGAGCGCCGAGGGCCCCCAAGTGAC
GGCCACGAGGCACTGGAGAAGGAGGTTCAGGCTCTTCGGGCCCAGCTGGAGGCGTGGCGTCTCCAAGGGG
AGGCTCCTCAGAGTGCACTGAGATCCCAGGAGGATGGCCACATCCCCCCGGGCTACATCTCACAGCTGGT
GGGCGTGATCACTGTGCCCGTTTTACAGACAAGGCCACTGAGCTCTGAGAGGTTATGTGACTTGCCCAAG
GTCACCCCGCCTGCAGGTCTCAAAGGTGGGATTTGA

Translation (431 aa):
MGGWKGPGQRRGKEGPEARRRAAERGGGGGGGGVPAPRSPAREPRPRSCLLLPPPWGAAMTPDLLNFKKG
WMSILDEPGEPPSPSLTTTSTSQWKKHWFVLTDSSLKYYRDSTAEEADELDGEIDLRSCTDVTEYAVQRN
YGFQIHTKDAVYTLSAMTSGIRRNWIEALRKTVRPTSAPDVTKLSDSNKENALHSYSTQKGPLKAGEQRA
GSEVISRGGPRKADGQRQALDYVELSPLTQASPQRARTPARTPDRLAKQEELERDLAQRSEERRKWFEAT
DSRTPEVPAGEGPRRGLGAPLTEDQQNRLSEEIEKKWQELEKLPLRENKRVPLTALLNQSRGERRGPPSD
GHEALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQLVGVITVPVLQTRPLSSERLCDLPK
VTPPAGLKGGI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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