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Report for CCDS36784.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36784.1 Public Mus musculus 13 Snx18 23 108 98 CCDS HistoryNCBI Gene:170625Re-query CCDS DB by CCDS ID:36784.1Re-query CCDS DB by GeneID:170625See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36784.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109241.4 ENSMUSP00000104864.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109241.4Link to Ensembl Protein Viewer:ENSMUSP00000104864.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000109241Re-query CCDS DB by Protein ID:ENSMUSP00000104864
Original member Current member NCBI NM_130796.4 NP_570614.2 Accepted alive Link to Nucleotide Sequence:NM_130796.4Link to Protein Sequence:NP_570614.2Re-query CCDS DB by Nucleotide ID:NM_130796Re-query CCDS DB by Protein ID:NP_570614Link to BLAST:NP_570614.2

Chromosomal Locations for CCDS 36784.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 113594609 113594862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 113616802 113618395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1848 nt):
ATGGCGCTGCGCGCCCGGGCGCTCTACGACTTTAAGTCCGAGAACCCCGGTGAGATCTCCCTGCGGGAGC
ACGAGGTGCTGAGCCTGTGCAGCGAGCAGGACATCGAGGGCTGGCTCGAAGGGATCAACAGCCGCGGCGA
CCGCGGCCTCTTCCCGGCCTCCTACGTGCAGGTGATCCGTGCGCCGGAGCCTGGCCCTCCGGCCGACGGC
GGCCCGGGAGCTCCGGCCCGCTACGCCAACGTGCCGCCCGGCGGCTTCGAGCCTCTGCCCGCCGCGCCAC
CCGCCGCCTTCCCGCCGCTGCTGCAGCCGCAGGCGTCACCCGGTTCCTTCCAGCCGCCGGGCGCCGGCTT
TCCCTACGGCGGGGGCGCCCTGCAGCCGTCGCCCCAGCAGCTCTACGGTGGATACCAGGCCAGCCTGGGC
AGCGACGATGACTGGGACGACGAGTGGGACGACAGCTCCACGGTGGCCGATGAGCCAGGCGCGCTGGGCA
GCGGCGCGTACCCGGACCTCGACGGCTCGTCGTCGGCGGGCGGCGGTGCGGCCGGCCGCTACCGCCTGTC
CACCCGCTCGGACCTGTCTCTGGGCTCCCGCGGCGTCTCGGCGCCCCCGGCGCACCAAGCGTCTGGAGCC
AAGAGCTCGGCCACGGTGAGCCGCAACCTCAATCGCTTCTCCACCTTCGTCAAGTCGGGCGGGGAGGCCT
TCGTGCTGGGAGAGGCGTCAGGCTTCGTGAAGGATGGGGACAAGCTGTGCGTGGTGCTGGGTCCCTACGG
CCCCGAGTGGCAGGAGAACCCCTACCCCTTCCAGTGCACCATCGACGACCCCACCAAGCAGACCAAGTTC
AAGGGCATGAAGAGCTACATCTCTTACAAGCTGGTGCCCACGCATACCCAGGTGCCCGTGCACAGGCGCT
ATAAGCACTTCGATTGGCTGTATGCGCGCCTGGCGGAGAAATTCCCAGTCATCTCGGTGCCCCATCTGCC
TGAGAAGCAGGCCACCGGGCGCTTCGAAGAGGACTTCATCTCCAAACGCAGGAAGGGTCTGATCTGGTGG
ATGAACCACATGGCCAGCCACCCGGTGCTGGCGCAGTGCGACGTCTTCCAGCATTTCCTGACCTGCCCCA
GCAGCACTGATGAGAAGGCCTGGAAACAGGGTAAGCGGAAGGCTGAGAAGGATGAGATGGTGGGCGCCAA
CTTCTTCCTCACTCTGAGCACCCCACCTGCCGCCGCCCTGGACCTGCAGGAGGTGGAGAGCAAGATAGAT
GGCTTCAAATGCTTCACCAAGAAGATGGACGACAGTGCGTTGCAGCTCAACCACACCGCCAACGAGTTTG
CGCGCAAGCAGGTGACTGGCTTCAAGAAGGAGTATCAGAAGGTGGGCCAGTCCTTCCGGGGTCTCAGCCA
AGCCTTTGAGCTGGATCAGCAGGCCTTCTCCGTGGGTCTGAATCAGGCCATTGCCTTCACTGGAGACGCC
TACGACGCCATCGGCGAACTCTTCGCTGAGCAGCCCAGGCAGGACCTGGACCCAGTCATGGACCTGTTAG
CACTGTATCAGGGGCACCTGGCCAACTTCCCAGACATCATCCATGTTCAGAAAGGAGCTCTTACCAAAGT
AAAGGAGAGTAGGCGACACGTGGAAGAAGGGAAGATGGAGGTCCAAAAAGCTGACGGCATTCAAGACCGC
TGTAACACTATTTCCTTCGCCACGTTGGCCGAGATTCATCACTTCCATCAAATTAGAGTAAGAGACTTTA
AATCACAGATGCAACATTTTTTACAACAACAAATAATATTTTTCCAAAAAGTGACCCAGAAGTTGGAAGA
GGCGCTTCACAAATACGACAGCGTCTAA

Translation (615 aa):
MALRARALYDFKSENPGEISLREHEVLSLCSEQDIEGWLEGINSRGDRGLFPASYVQVIRAPEPGPPADG
GPGAPARYANVPPGGFEPLPAAPPAAFPPLLQPQASPGSFQPPGAGFPYGGGALQPSPQQLYGGYQASLG
SDDDWDDEWDDSSTVADEPGALGSGAYPDLDGSSSAGGGAAGRYRLSTRSDLSLGSRGVSAPPAHQASGA
KSSATVSRNLNRFSTFVKSGGEAFVLGEASGFVKDGDKLCVVLGPYGPEWQENPYPFQCTIDDPTKQTKF
KGMKSYISYKLVPTHTQVPVHRRYKHFDWLYARLAEKFPVISVPHLPEKQATGRFEEDFISKRRKGLIWW
MNHMASHPVLAQCDVFQHFLTCPSSTDEKAWKQGKRKAEKDEMVGANFFLTLSTPPAAALDLQEVESKID
GFKCFTKKMDDSALQLNHTANEFARKQVTGFKKEYQKVGQSFRGLSQAFELDQQAFSVGLNQAIAFTGDA
YDAIGELFAEQPRQDLDPVMDLLALYQGHLANFPDIIHVQKGALTKVKESRRHVEEGKMEVQKADGIQDR
CNTISFATLAEIHHFHQIRVRDFKSQMQHFLQQQIIFFQKVTQKLEEALHKYDSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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