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Report for CCDS29170.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
29170.1 |
Public |
Mus musculus |
18 |
Pcdhb2 |
23 |
108 |
98 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:93873](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:29170.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:93873](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 18 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 29170.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENSMUST00000056522.4 |
ENSMUSP00000057921.3 |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENSMUST00000056522.4](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSMUSP00000057921.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENSMUST00000056522](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSMUSP00000057921](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_053127.2 |
NP_444357.1 |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_053127.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_444357.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_053127](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_444357](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_444357.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 29170.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (2400 nt): ATGGAGGCTGGAGAGGAAATGGAGCAAATCCTGAAAAAAAGGCAAGTCCTGCTGTTCTTTGTTTTGCTGG GCATAGCTCAGGCTGGGTCCACAATTAGGCGCTATTCCGTGGAGGAGGAAGCAGAGAACGGTGTTTTTGT GGCAAATTTGTTAAAGGACCTGGGGCTGGAGGTAGAGGAACTCGCTGCACGGGGACCGCGAGTCATTTCC AAAGGGAAAAAATTGAACTTAGAATTCAATAGGCAAACAGGAGATTTGTTGTTAAGGGAGAAACTGGACC GGGAGGAGCTGTGTGGACCTGCTGAACCCTGTGTGGTACCTTTCCAGGTGTTACTGGGAAATCCTTTGCA GATTTTTCAGGCTGAGCTACAGATTAGGGACATAAATGATCATTCTCCCGTTTTTCTGGACAAAGAAATT ACTTTGAAAATTTCAGAAAGTACTGCTTCCGGTACCACTTTCCTAATAGAACGTGCTCAAGACTTAGATG TAGGAAGCAACGGTCTCCAAACTTACACAATCAACCCCAATTTCTATTTTCATCTTAATCTACAAAACAG TCCTGATGGCACAGTATTGCCACAGCTGGTTCTGGACAAAGTGCTGGATCGGGAGGAGCGATCAGAAATC AGATTAATACTCACAGCTCTAGATGGTGGGAATCCACCCAGGTCTGGCACCGTCCAAATCCTTATTGAAG TCTTAGACATCAATGACAATGCCCCGGTGTTTTCAAAGCTTCGCTATGAGGTTCAGATCCCAGAGAACAG TCCTGTTGGATCCCAGGTTGCTACTGTCTCTGCTAGGGATTTAGACATTGGGGACCATGGAAATATAGCT TACGCCTTTTCCCAAGCCTCTGAAGACATTCGGAAAACGTTTCGAATGAATGCAACATCCGGAGAAATCC TTTTAGTAAAGACACTGGATTTTGAATCCATCCAGGCATATACAATATGTGTTCAGGCTACAGATGGTGG GGGACTTTCTGGAAGCAGTGTGGTGATTGTTCAAGTAATGGATTTGAATGACAACCCTCCAGAACTGACT ATGTCCACATTTACCAATCACATCCCAGAAAACGCCCCGGAAACCGTAATTGCTGTGTTTAGTGTTGCAG ATTCTGACTCTGGAGACAATGGAAAAATGGTTTGCTCCATCCAAGAAGATCTTCCTTTTATTCTAAAACC CTCATTTGAGAACTTTTACACTCTTATGACAAACACAGCCCTGGATCGAGAGACCAGATCACAGTACAAC ATCACTATCATGGTCTCAGACCTGGGCACACCCAGGCTAACAGCTCAGCACACCATAATAGTACAGGTGT CTGACATCAACGACAACGCCCCCGCCTTCACCCAAACCTCCTATACCATATTTGTCCGAGAAAACAACAG CCCTGCCCTGCACATAGGCACCATCAGTGCCACAGATTCAGACTCAGGCTCTAATGCCCACATCACCTAC TCGCTGCTGCCGCCCCAAGACCCACAGTTGGCCCTCCATTCCCTGGTCTCCATCAATGCAGACAACGGGC AGCTGTTCGCGCTCAGGGCGCTGGACTACGAGGACCAGCAGACCTTCAAGTTCCATGTGGGCGCCACAGA TGGAGGATCACCGGCACTCAGCAGCCAGACTCTGGTGCGTGTGGTGGTGCTGGATGACAATGATAATGCG CCCTTCGTGCTCTACCCACTACAGAACTCTTCTGTGCCCTGCACTGAGCTGCTGCCCAGGGCGGCAGAGC CCGGATACCTAGTCACCAAGGTGGTGGCAGTGGACCGCGACTCTGGCCAGAATGCCTGGTTGTCATTCCA GCTGCTCAAGGCCACGGAGCCCGGGCTGTTCAGCGTGTGGGCGCACAATGGCGAGGTGCGCACCACCAGG CTGCTGAGTGAGCGAGATGCACCCAAACACAGGCTGCTGCTGCTGGTCAAGGACAATGGAGACCCTCCGC ATTCTGCCAGCGTCACATTGCAGGTGCTAGTGGTGGATGGCTTCTCTCAACCCTACTTGCCTCTGCCAGA GGTGGCCCGCGACCCTGCCCAAGATGAGGACATACTAACACTCTACCTGGTCATTGCCTTGGCCTCTGTG TCTTCTCTCTTCCTCCTGTCTGTACTGCTGTTCGTGGGGGTAAGGCTGTGCAGGAGGGCCAGAGCCACCT CGCTGGGTGGCTGCTCTATGCCCGAAGGCCACTTTCCAGCCCACCTGGTAGATGTTGGCGGCGCGGGGAC CCTGTCCCAGAGTTATCAATATGAAGTGTGCCTGACTGGAGATACTGGGACCCCAGATTTCAAGTTCTTG AAACCAATCATCCCCAATTTCCTCCTTCAGAGTTCAGAGACAGAGAATGATACAAACCCTAGTTACAGGA ATAGTTTTGAATTCAGTTAA
Translation (799 aa): MEAGEEMEQILKKRQVLLFFVLLGIAQAGSTIRRYSVEEEAENGVFVANLLKDLGLEVEELAARGPRVIS KGKKLNLEFNRQTGDLLLREKLDREELCGPAEPCVVPFQVLLGNPLQIFQAELQIRDINDHSPVFLDKEI TLKISESTASGTTFLIERAQDLDVGSNGLQTYTINPNFYFHLNLQNSPDGTVLPQLVLDKVLDREERSEI RLILTALDGGNPPRSGTVQILIEVLDINDNAPVFSKLRYEVQIPENSPVGSQVATVSARDLDIGDHGNIA YAFSQASEDIRKTFRMNATSGEILLVKTLDFESIQAYTICVQATDGGGLSGSSVVIVQVMDLNDNPPELT MSTFTNHIPENAPETVIAVFSVADSDSGDNGKMVCSIQEDLPFILKPSFENFYTLMTNTALDRETRSQYN ITIMVSDLGTPRLTAQHTIIVQVSDINDNAPAFTQTSYTIFVRENNSPALHIGTISATDSDSGSNAHITY SLLPPQDPQLALHSLVSINADNGQLFALRALDYEDQQTFKFHVGATDGGSPALSSQTLVRVVVLDDNDNA PFVLYPLQNSSVPCTELLPRAAEPGYLVTKVVAVDRDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTR LLSERDAPKHRLLLLVKDNGDPPHSASVTLQVLVVDGFSQPYLPLPEVARDPAQDEDILTLYLVIALASV SSLFLLSVLLFVGVRLCRRARATSLGGCSMPEGHFPAHLVDVGGAGTLSQSYQYEVCLTGDTGTPDFKFL KPIIPNFLLQSSETENDTNPSYRNSFEFS
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