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Report for CCDS17101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17101.1 Public Mus musculus 2 Rnf114 23 108 98 CCDS HistoryNCBI Gene:81018Re-query CCDS DB by CCDS ID:17101.1Re-query CCDS DB by GeneID:81018See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17101.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078050.6 ENSMUSP00000077197.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078050.6Link to Ensembl Protein Viewer:ENSMUSP00000077197.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000078050Re-query CCDS DB by Protein ID:ENSMUSP00000077197
Original member Current member EBI ENSMUST00000109214.7 ENSMUSP00000104837.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109214.7Link to Ensembl Protein Viewer:ENSMUSP00000104837.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109214Re-query CCDS DB by Protein ID:ENSMUSP00000104837
Original member Current member NCBI NM_001360930.1 NP_001347859.1 Accepted alive Link to Nucleotide Sequence:NM_001360930.1Link to Protein Sequence:NP_001347859.1Re-query CCDS DB by Nucleotide ID:NM_001360930Re-query CCDS DB by Protein ID:NP_001347859Link to BLAST:NP_001347859.1
Original member Current member NCBI NM_030743.6 NP_109668.2 Accepted alive Link to Nucleotide Sequence:NM_030743.6Link to Protein Sequence:NP_109668.2Re-query CCDS DB by Nucleotide ID:NM_030743Re-query CCDS DB by Protein ID:NP_109668Link to BLAST:NP_109668.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347859.1 229 Q9ET26 229 100% 0 0
NP_109668.2 229 Q9ET26 229 100% 0 0

Chromosomal Locations for CCDS 17101.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 167503459 167503601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167507047 167507197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167510876 167510982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167511212 167511326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167512517 167512624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 167514666 167514731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (690 nt):
ATGGCGGCGGCGCAGCCGGAGTCCCGAGATGGAGCCGCGCAGTCGGCGAAGCCGGCGTCCGAGACGGACC
CCCTCAGCCGCTTTACGTGTCCCGTGTGCCTGGAAGTATTCGAGAAGCCGGTGCAGGTGCCCTGCGGACA
CGTCTTTTGCTCTGCATGCCTGCAGGAATGTCTGAAGCCGAAGAAACCTGTCTGTGGGGTGTGTCGCAGC
GCTCTGGCACCTGGCGTCCGAGCTGTGGAGCTCGAGCGGCAGATCGAGAGCATAGAGACTTCTTGCCATG
GCTGCCGTAAGAATTTCATCCTATCTAAGATCCGGGCCCATGTGACGTCATGTTCCAAATACCAGAATTA
CATCATGGAAGGTGTAAAGGCCACCACCAAGGATGCATCCCTTCAGCCGAGAAACATCCCAAACCGATAC
ACCTTTCCTTGTCCTTACTGTCCCGAGAAGAACTTTGATCAGGAAGGACTCGTGGAGCACTGCAAACTCA
CTCACAGCACCGATACCAAGTCTGTGGTTTGTCCCATCTGTGCCTCGATGCCCTGGGGAGACCCCAGCTA
CCGCAGTGCCAACTTCATGGAGCATATCCAACGCCGTCACCGCTTTTCCTACGACACTTTTGTGGATTAC
GATGTTGATGAAGATGACATGATAAACCAGGTGTTGCAGCGCTCCATCATTGACCAATGA

Translation (229 aa):
MAAAQPESRDGAAQSAKPASETDPLSRFTCPVCLEVFEKPVQVPCGHVFCSACLQECLKPKKPVCGVCRS
ALAPGVRAVELERQIESIETSCHGCRKNFILSKIRAHVTSCSKYQNYIMEGVKATTKDASLQPRNIPNRY
TFPCPYCPEKNFDQEGLVEHCKLTHSTDTKSVVCPICASMPWGDPSYRSANFMEHIQRRHRFSYDTFVDY
DVDEDDMINQVLQRSIIDQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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