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Report for CCDS16660.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16660.1 Public Mus musculus 2 Duoxa2 23 108 98 CCDS HistoryNCBI Gene:66811Re-query CCDS DB by CCDS ID:16660.1Re-query CCDS DB by GeneID:66811See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16660.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028656.1 ENSMUSP00000028656.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028656.1Link to Ensembl Protein Viewer:ENSMUSP00000028656.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000028656Re-query CCDS DB by Protein ID:ENSMUSP00000028656
Original member NCBI NM_025777.2 NP_080053.1 Updated not alive Link to Nucleotide Sequence:NM_025777.2Link to Protein Sequence:NP_080053.1Re-query CCDS DB by Nucleotide ID:NM_025777Re-query CCDS DB by Protein ID:NP_080053
Current member NCBI NM_025777.3 NP_080053.1 Accepted alive Link to Nucleotide Sequence:NM_025777.3Link to Protein Sequence:NP_080053.1Re-query CCDS DB by Nucleotide ID:NM_025777Re-query CCDS DB by Protein ID:NP_080053Link to BLAST:NP_080053.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080053.1 320 Q9D311 320 100% 0 0

Chromosomal Locations for CCDS 16660.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 122299041 122299187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122300148 122300205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122300565 122300699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122301172 122301385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122301661 122301875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122302204 122302397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGACTGCGTGGGACGGGGTGCTACCCTTTTACCCCCAGCCCAGGCATGCCGCCAGCTTCAGCGTACCGC
TGCTCATTGTTATCCTGGTGTTCTTGTCTTTGGCTGCTAGCTTCCTGTTCATCTTGCCTGGAATCCGTGG
GCACTCGCGCTGGTTCTGGTTGGTGAGAGTCCTTCTTAGCCTGTTCATAGGTGCCGAAATTGTGGCTGTG
CACTTCAGTGGAGACTGGTTCGTGGGGAGAGTGTGGACCAACACATCCTACAAAGCCTTCAGTCCATCCC
GTGTTCAAGTCCATGTCGGTCTGCACGTGGGGCTGGCGGGCGTTAACATTACACTCCGAGGAACACCGAG
GCAGCAGCTGAACGAGACCATTGACTACAATGAGCGTTTCACTTGGCGTCTGAACGAAGACTACACCAAG
GAGTATGTCCATGCCTTGGAGAAGGGACTGCCGGACCCAGTGCTATACCTGGCAGAGAAGTTCACACCGA
GCAGTCCTTGCGGGCTGTACCACCAATATCACCTGGCCGGTCACTATGCCGCAGCAACACTGTGGGTGGC
ATTCTGCTTCTGGATCATCGCCAATGCGCTGCTCTCCATGCCCGCCCCACTCTACGGAGGCCTGGCTTTG
CTCACCACCGGTGCCTTCACGCTCTTCGGTGTCTTCGCCTTCGCCTCGATTTCCAGCGTGCCGCTCTGCC
ACTTCCGCCTGGGCTCCGCCGTCCTCACGCCTTACTACGGCGCCTCCTTTTGGCTCACGCTGGCCACCGG
CATCCTGAGCCTCCTCCTCGGAGGGGCGGTGGTGATTCTCCACTATACTCGGCCCAGCGCCCTTCGCTCC
TTTCTGGATCTAAGTGTCAAAGACTGTAGCAACCAGGCTAAAGGAAACTCACCTCTCACCCTCAACAACC
CGCAACACGAACAGTTGAAGAGTCCAGACTTAAATATTACCACTCTCCTGTGA

Translation (320 aa):
MTAWDGVLPFYPQPRHAASFSVPLLIVILVFLSLAASFLFILPGIRGHSRWFWLVRVLLSLFIGAEIVAV
HFSGDWFVGRVWTNTSYKAFSPSRVQVHVGLHVGLAGVNITLRGTPRQQLNETIDYNERFTWRLNEDYTK
EYVHALEKGLPDPVLYLAEKFTPSSPCGLYHQYHLAGHYAAATLWVAFCFWIIANALLSMPAPLYGGLAL
LTTGAFTLFGVFAFASISSVPLCHFRLGSAVLTPYYGASFWLTLATGILSLLLGGAVVILHYTRPSALRS
FLDLSVKDCSNQAKGNSPLTLNNPQHEQLKSPDLNITTLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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