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Report for CCDS38131.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38131.1 Public Mus musculus 2 Scn1a 23 108 98 CCDS HistoryNCBI Gene:20265Re-query CCDS DB by CCDS ID:38131.1Re-query CCDS DB by GeneID:20265See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 38131.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077489.11 ENSMUSP00000076697.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077489.11Link to Ensembl Protein Viewer:ENSMUSP00000076697.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000077489Re-query CCDS DB by Protein ID:ENSMUSP00000076697
Original member Current member NCBI NM_018733.2 NP_061203.2 Accepted alive Link to Nucleotide Sequence:NM_018733.2Link to Protein Sequence:NP_061203.2Re-query CCDS DB by Nucleotide ID:NM_018733Re-query CCDS DB by Protein ID:NP_061203Link to BLAST:NP_061203.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061203.2 1998 A2APX8-2 1998 100% 0 0

Chromosomal Locations for CCDS 38131.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 66272885 66274062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66277562 66277832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66280696 66280800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66285911 66286048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66287723 66287776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66288874 66289155 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66296753 66296875 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66299624 66299797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66302366 66302520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66303592 66303712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66317804 66318286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66319386 66319742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66320868 66321041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66322254 66322492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66323312 66323444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66324604 66324951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66325902 66326186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66327651 66327857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66328405 66328546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66329031 66329094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66331239 66331508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66332207 66332298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66334208 66334336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66335440 66335529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66337878 66337996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 66350914 66351177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5997 nt):
ATGGAGCAAACAGTGCTTGTACCACCAGGACCTGACAGCTTCAACTTCTTCACCAGAGAATCCCTTGCAG
CTATTGAAAGGCGCATTGCAGAAGAGAAGGCTAAGAATCCCAAGCCAGACAAAAAAGATGATGATGAAAA
TGGCCCAAAGCCAAACAGTGACTTGGAAGCTGGGAAGAACCTTCCATTTATCTATGGAGACATTCCTCCA
GAGATGGTGTCGGAGCCTCTGGAGGACCTGGACCCCTACTATATCAATAAGAAGACTTTTATAGTATTGA
ATAAAGGGAAGGCCATCTTCCGGTTCAGTGCCACCTCCGCCCTGTACATTTTAACACCCTTCAATCCTCT
TAGGAAAATAGCTATTAAGATTTTGGTACACTCATTATTCAGCATGTTAATCATGTGCACTATTTTGACA
AACTGTGTATTTATGACAATGAGTAACCCTCCCGACTGGACAAAGAATGTGGAGTACACCTTCACAGGAA
TATATACTTTTGAATCACTAATAAAAATTATTGCAAGGGGCTTCTGTTTAGAAGATTTTACTTTCCTTCG
CGACCCATGGAACTGGCTGGACTTCACTGTCATTACATTCGCATATGTGACGGAGTTTGTGGACCTGGGC
AATGTCTCAGCATTGAGAACATTCAGAGTTCTTCGAGCATTGAAAACTATTTCAGTCATTCCAGGCCTGA
AGACCATCGTGGGGGCCCTGATCCAGTCGGTGAAGAAGCTGTCTGACGTCATGATACTCACTGTGTTCTG
TCTCAGTGTGTTCGCACTCATCGGGTTGCAGCTCTTCATGGGCAACCTGAGGAATAAATGTGTACAGTGG
CCTCCCACCAACGCTTCCCTTGAGGAACATAGCATAGAGAAGAATATAACTATGGATTACAATGGCACAC
TTGTAAATGAAACCGTGTTCGAGTTTGACTGGAAATCATACATTCAAGACTCAAGATATCATTATTTCCT
GGAGGGTGTTTTAGATGCACTGCTGTGTGGAAATAGCTCTGATGCAGGCCAATGTCCAGAAGGATATATG
TGTGTAAAAGCTGGTAGAAACCCTAATTATGGTTACACAAGCTTTGATACCTTCAGTTGGGCATTTTTGT
CCCTGTTTCGACTGATGACTCAGGACTTCTGGGAAAATCTATACCAACTGACATTGCGTGCTGCTGGCAA
AACCTACATGATATTTTTTGTGCTGGTCATTTTCTTGGGCTCATTCTACCTGATAAACTTGATCCTGGCT
GTGGTGGCCATGGCCTATGAGGAGCAGAATCAGGCCACACTGGAGGAGGCTGAACAGAAAGAGGCAGAAT
TTCAGCAGATGTTGGAGCAACTTAAGAAGCAGCAAGAGGCTGCACAGCAGGCAGCGGCTACAACAGCCTC
AGAACATTCCAGGGAGCCCAGTGCAGCAGGCAGGCTCTCAGATAGCTCTTCAGAAGCCTCTAAGTTGAGT
TCGAAGAGTGCTAAAGAAAGACGAAATCGGAGGAAAAAAAGGAAACAGAAAGAGCAGTCTGGAGGAGAAG
AGAAAGATGATGATGAATTCCACAAGTCTGAGTCTGAAGACAGCATCAGGAGGAAGGGGTTTCGCTTCTC
CATAGAAGGGAATAGACTGACATATGAAAAGAGGTACTCTTCCCCGCATCAGTCTCTGTTAAGCATTCGT
GGTTCCCTGTTCTCCCCAAGACGCAATAGCAGAACAAGTCTTTTCAGCTTTAGAGGGCGAGCCAAGGATG
TGGGGTCTGAGAATGACTTTGCTGATGATGAACACAGCACCTTTGAGGATAATGAGAGCCGTAGAGACTC
ACTGTTCGTTCCCCGAAGACACGGAGAGCGACGCAACAGTAACCTGAGCCAGACCAGCAGGTCCTCCCGA
ATGCTGGCGGTGTTTCCAGCCAATGGGAAGATGCACAGCACGGTGGATTGCAATGGTGTGGTTTCCTTGG
TTGGTGGACCCTCAGTTCCCACATCGCCAGTTGGACAGCTTCTGCCAGAGGGAACAACCACTGAAACTGA
GATGAGAAAGAGGAGGTCGAGCTCTTTCCATGTTTCCATGGACTTTCTAGAAGATCCTTCCCAGAGGCAA
AGGGCAATGAGCATAGCCAGCATCTTAACAAATACAGTAGAAGAACTAGAAGAATCCAGGCAGAAATGTC
CACCCTGTTGGTATAAATTTTCCAACATATTCTTAATTTGGGACTGTTCTCCATATTGGCTGAAAGTTAA
ACATATTGTCAACCTGGTGGTGATGGACCCATTTGTTGATCTGGCCATTACCATCTGCATTGTGTTAAAT
ACGCTCTTCATGGCTATGGAGCACTACCCCATGACTGAACATTTCAACCATGTTCTTACAGTGGGAAACT
TGGTCTTCACTGGGATTTTCACAGCAGAAATGTTCCTGAAAATCATCGCAATGGATCCTTACTATTACTT
CCAAGAAGGCTGGAATATCTTTGATGGTTTCATTGTGACACTCAGCCTGGTAGAACTTGGCCTTGCCAAT
GTGGAAGGATTGTCAGTTCTCCGTTCATTTCGACTGCTCCGAGTGTTCAAGTTGGCAAAGTCTTGGCCCA
CACTGAATATGCTCATTAAGATCATTGGTAACTCGGTGGGAGCACTGGGCAACCTGACTCTGGTGTTGGC
CATCATTGTCTTTATTTTTGCCGTGGTTGGCATGCAGCTGTTTGGAAAAAGTTACAAAGATTGTGTCTGC
AAAATTGCCACTGACTGCAAACTCCCACGTTGGCACATGAACGACTTCTTCCACTCGTTCCTGATCGTGT
TCCGCGTGCTGTGTGGGGAGTGGATAGAGACCATGTGGGACTGCATGGAGGTGGCAGGACAAGCTATGTG
CCTTACTGTCTTCATGATGGTCATGGTGATTGGGAACCTTGTGGTCTTGAACCTCTTTCTGGCCTTGCTT
CTGAGCTCATTTAGTGCAGACAACCTTGCAGCCACTGATGATGACAATGAGATGAACAACCTGCAGATTG
CTGTGGACAGGATGCACAAAGGAATAGCTTATGTAAAAAGAAAAATATATGAATTCATTCAACAATCCTT
TGTTAAGAAACAGAAGATTCTAGATGAAATTAAGCCACTTGATGATCTAAACAACAGAAAAGACAATTGT
ATCTCTAACCACACAACAGAAATTGGGAAAGATCTGGACTGTCTGAAAGATGTGAATGGAACCACAAGTG
GCATAGGGACGGGCAGCAGTGTGGAGAAGTACATCATTGATGAGAGTGATTATATGTCATTCATAAACAA
CCCCAGCCTCACTGTGACTGTGCCCATTGCTGTGGGAGAGTCTGACTTTGAGAACTTAAACACAGAAGAC
TTTAGCAGTGAATCAGATCTAGAAGAAAGCAAAGAGAAACTCAACGAAAGCAGTAGCTCCTCAGAGGGAA
GCACAGTAGACATTGGGGCGCCTGCAGAGGAACAGCCTGTCATTGAACCAGAAGAAACCCTTGAGCCCGA
AGCTTGCTTCACTGAAGGCTGTGTCCAGAGATTCAAGTGCTGTCAAATCAGCGTGGAAGAAGGAAGAGGG
AAACAGTGGTGGAACCTACGGAGGACGTGCTTCCGAATAGTTGAACACAACTGGTTTGAGACCTTCATTG
TGTTCATGATTCTCCTGAGTAGTGGTGCCCTGGCCTTTGAGGATATATATATTGATCAGCGAAAGACGAT
CAAAACCATGCTGGAGTATGCTGACAAAGTCTTCACTTACATTTTCATCCTGGAGATGCTCCTCAAATGG
GTGGCCTATGGCTATCAAACATACTTCACCAATGCCTGGTGTTGGCTAGACTTCTTAATTGTTGATGTTT
CATTGGTCAGTTTAACAGCAAATGCCTTGGGTTACTCTGAACTCGGGGCCATCAAATCCCTAAGGACACT
AAGAGCTCTGAGACCCCTAAGAGCCTTATCACGATTTGAAGGGATGAGGGTGGTTGTGAATGCCCTGTTA
GGAGCAATTCCATCCATCATGAATGTGCTTCTGGTTTGCCTTATATTCTGGCTAATTTTCAGCATCATGG
GCGTAAATTTGTTTGCTGGCAAATTCTACCACTGTGTTAACACCACAACTGGTGACATATTTGAGATCAG
CGAAGTCAATAATCATTCTGATTGCCTAAAACTAATAGAAAGAAATGAGACCGCCCGGTGGAAAAATGTG
AAAGTAAACTTTGATAATGTAGGATTTGGGTATCTTTCTTTGCTTCAAGTTGCCACATTTAAGGGCTGGA
TGGATATCATGTATGCTGCAGTTGATTCCAGAAATGTTGAACTACAGCCTAAGTATGAGGAAAGCCTGTA
CATGTATTTGTACTTCGTCATCTTCATCATCTTCGGGTCCTTCTTTACCCTGAACCTGTTTATTGGTGTC
ATTATCGACAATTTCAACCAGCAAAAGAAGAAGTTTGGAGGTCAAGACATCTTTATGACAGAAGAACAGA
AGAAATACTATAATGCAATGAAGAAATTAGGATCAAAAAAGCCACAAAAGCCTATCCCTCGACCTGGAAA
CAAATTTCAAGGAATGGTTTTTGACTTTGTAACCAGACAAGTGTTTGATATCAGCATCATGATCCTCATC
TGTCTGAACATGGTGACCATGATGGTGGAAACGGATGACCAGAGCGATTATGTGACAAGCATTTTGTCAC
GCATCAACCTGGTGTTCATCGTCCTGTTCACCGGCGAGTGTGTGCTCAAGCTCATCTCGCTCCGCCATTA
TTATTTCACCATTGGATGGAACATTTTCGATTTTGTGGTGGTCATCCTCTCCATTGTAGGGATGTTTCTT
GCGGAGCTAATAGAAAAGTATTTTGTGTCTCCTACCCTGTTCCGAGTCATCCGCCTGGCCAGGATTGGAC
GAATCCTACGCCTGATCAAAGGTGCCAAGGGGATCCGCACGCTGCTCTTTGCTCTGATGATGTCCCTTCC
TGCGCTGTTTAACATCGGCCTCCTGCTTTTTCTCGTCATGTTCATCTACGCCATCTTTGGGATGTCCAAC
TTTGCCTATGTTAAGAGGGAAGTTGGGATTGATGACATGTTCAACTTTGAGACCTTCGGCAACAGCATGA
TCTGCCTGTTCCAAATCACCACCTCTGCGGGCTGGGATGGACTGCTGGCCCCCATCCTCAACAGCAAACC
CCCTGACTGTGACCCTAATAAAGTTAACCCTGGAAGCTCGGTGAAGGGAGACTGTGGGAACCCATCTGTG
GGGATTTTCTTTTTTGTCAGCTACATCATCATATCCTTCCTGGTTGTGGTGAACATGTACATTGCTGTCA
TCCTGGAGAACTTCAGCGTTGCCACAGAAGAAAGTGCAGAGCCTCTGAGTGAGGACGACTTTGAGATGTT
CTACGAGGTCTGGGAGAAGTTCGACCCTGACGCCACCCAGTTCATGGAATTTGAAAAATTATCTCAGTTT
GCAGCTGCTCTAGAACCCCCTCTCAATTTGCCACAACCAAACAAACTTCAGCTCATTGCCATGGACCTGC
CCATGGTGAGTGGAGACCGCATCCACTGCCTGGACATCTTATTTGCTTTTACAAAGCGGGTGTTGGGTGA
GAGTGGAGAGATGGATGCTCTTCGAATCCAGATGGAAGAGCGGTTCATGGCTTCCAACCCCTCCAAGGTC
TCTTATCAGCCCATCACTACTACATTAAAACGCAAACAAGAGGAGGTGTCAGCTGTTATCATTCAGCGAG
CTTATAGGCGCCACCTTTTGAAGCGAACAGTAAAACAAGCTTCATTCACATACAATAAGAACAAACTCAA
AGGTGGGGCTAATCTTCTTGTAAAAGAAGACATGCTCATTGACAGAATAAACGAAAACTCTATTACGGAG
AAAACTGACCTGACAATGTCCACAGCAGCTTGTCCGCCCTCCTACGATCGGGTGACAAAGCCAATCGTGG
AGAAACACGAGCAGGAAGGGAAGGATGAAAAAGCCAAAGGGAAATGA

Translation (1998 aa):
MEQTVLVPPGPDSFNFFTRESLAAIERRIAEEKAKNPKPDKKDDDENGPKPNSDLEAGKNLPFIYGDIPP
EMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKIAIKILVHSLFSMLIMCTILT
NCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCLEDFTFLRDPWNWLDFTVITFAYVTEFVDLG
NVSALRTFRVLRALKTISVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCVQW
PPTNASLEEHSIEKNITMDYNGTLVNETVFEFDWKSYIQDSRYHYFLEGVLDALLCGNSSDAGQCPEGYM
CVKAGRNPNYGYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILA
VVAMAYEEQNQATLEEAEQKEAEFQQMLEQLKKQQEAAQQAAATTASEHSREPSAAGRLSDSSSEASKLS
SKSAKERRNRRKKRKQKEQSGGEEKDDDEFHKSESEDSIRRKGFRFSIEGNRLTYEKRYSSPHQSLLSIR
GSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFEDNESRRDSLFVPRRHGERRNSNLSQTSRSSR
MLAVFPANGKMHSTVDCNGVVSLVGGPSVPTSPVGQLLPEGTTTETEMRKRRSSSFHVSMDFLEDPSQRQ
RAMSIASILTNTVEELEESRQKCPPCWYKFSNIFLIWDCSPYWLKVKHIVNLVVMDPFVDLAITICIVLN
TLFMAMEHYPMTEHFNHVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIVTLSLVELGLAN
VEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKDCVC
KIATDCKLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCMEVAGQAMCLTVFMMVMVIGNLVVLNLFLALL
LSSFSADNLAATDDDNEMNNLQIAVDRMHKGIAYVKRKIYEFIQQSFVKKQKILDEIKPLDDLNNRKDNC
ISNHTTEIGKDLDCLKDVNGTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTED
FSSESDLEESKEKLNESSSSSEGSTVDIGAPAEEQPVIEPEETLEPEACFTEGCVQRFKCCQISVEEGRG
KQWWNLRRTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFTYIFILEMLLKW
VAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRALRPLRALSRFEGMRVVVNALL
GAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCVNTTTGDIFEISEVNNHSDCLKLIERNETARWKNV
KVNFDNVGFGYLSLLQVATFKGWMDIMYAAVDSRNVELQPKYEESLYMYLYFVIFIIFGSFFTLNLFIGV
IIDNFNQQKKKFGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTRQVFDISIMILI
CLNMVTMMVETDDQSDYVTSILSRINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMFL
AELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYAIFGMSN
FAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSKPPDCDPNKVNPGSSVKGDCGNPSV
GIFFFVSYIIISFLVVVNMYIAVILENFSVATEESAEPLSEDDFEMFYEVWEKFDPDATQFMEFEKLSQF
AAALEPPLNLPQPNKLQLIAMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKV
SYQPITTTLKRKQEEVSAVIIQRAYRRHLLKRTVKQASFTYNKNKLKGGANLLVKEDMLIDRINENSITE
KTDLTMSTAACPPSYDRVTKPIVEKHEQEGKDEKAKGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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