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Report for CCDS43782.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43782.1 Public Homo sapiens 8 SLC39A4 24 110 108 CCDS HistoryNCBI Gene:55630Re-query CCDS DB by CCDS ID:43782.1Re-query CCDS DB by GeneID:55630See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43782.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000276833.9 ENSP00000276833.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000276833.9Link to Ensembl Protein Viewer:ENSP00000276833.5Re-query CCDS DB by Nucleotide ID:ENST00000276833Re-query CCDS DB by Protein ID:ENSP00000276833
Original member Current member NCBI NM_017767.3 NP_060237.3 Accepted alive Link to Nucleotide Sequence:NM_017767.3Link to Protein Sequence:NP_060237.3Re-query CCDS DB by Nucleotide ID:NM_017767Re-query CCDS DB by Protein ID:NP_060237Link to BLAST:NP_060237.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060237.3 622 Q6P5W5-2 622 100% 0 0

Chromosomal Locations for CCDS 43782.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 144412538 144412666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144412759 144412946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144413237 144413389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144413513 144413567 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144413750 144413881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144413958 144414095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144414262 144414434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144414725 144414896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144414974 144415110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144415227 144415419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 144415810 144416208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1869 nt):
ATGGTGGACGTTGTTGGACTTGAAAGGGAAACAGGCCCTCGGGGAAGCCCCTGGCCAGGCCTGCCTCTCC
CCTCCCTGGTGGGCCCAGCGCCCCTGCTCACTTGTCTCTGCCCACAGTGCCTGTCTGTGGAGGACGCCCT
GGGCCTGGGCGAGCCTGAGGGGTCAGGGCTGCCCCCGGGCCCGGTCCTGGAGGCCAGGTACGTCGCCCGC
CTCAGTGCCGCCGCCGTCCTGTACCTCAGCAACCCCGAGGGCACCTGTGAGGACGCTCGGGCTGGCCTCT
GGGCCTCTCATGCAGACCACCTCCTGGCCCTGCTCGAGAGCCCCAAGGCCCTGACCCCGGGCCTGAGCTG
GCTGCTGCAGAGGATGCAGGCCCGGGCTGCCGGCCAGACCCCCAAGATGGCCTGCGTAGATATCCCTCAG
CTGCTGGAGGAGGCGGTGGGGGCGGGGGCTCCGGGCAGTGCTGGCGGCGTCCTGGCTGCCCTGCTGGACC
ATGTCAGGAGCGGGTCTTGCTTCCACGCCTTGCCGAGCCCTCAGTACTTCGTGGACTTTGTGTTCCAGCA
GCACAGCAGCGAGGTCCCTATGACGCTGGCCGAGCTGTCAGCCTTGATGCAGCGCCTGGGGGTGGGCAGG
GAGGCCCACAGTGACCACAGTCATCGGCACAGGGGAGCCAGCAGCCGGGACCCTGTGCCCCTCATCAGCT
CCAGCAACAGCTCCAGTGTGTGGGACACGGTATGCCTGAGTGCCAGGGACGTGATGGCTGCATATGGACT
GTCGGAACAGGCTGGGGTGACCCCGGAGGCCTGGGCCCAACTGAGCCCTGCCCTGCTCCAACAGCAGCTG
AGTGGAGCCTGCACCTCCCAGTCCAGGCCCCCCGTCCAGGACCAGCTCAGCCAGTCAGAGAGGTATCTGT
ACGGCTCCCTGGCCACGCTGCTCATCTGCCTCTGCGCGGTCTTTGGCCTCCTGCTGCTGACCTGCACTGG
CTGCAGGGGGGTCACCCACTACATCCTGCAGACCTTCCTGAGCCTGGCAGTGGGTGCAGTCACTGGGGAC
GCTGTCCTGCATCTGACGCCCAAGGTGCTGGGGCTGCATACACACAGCGAAGAGGGCCTCAGCCCACAGC
CCACCTGGCGCCTCCTGGCTATGCTGGCCGGGCTCTACGCCTTCTTCCTGTTTGAGAACCTCTTCAATCT
CCTGCTGCCCAGGGACCCGGAGGACCTGGAGGACGGGCCCTGCGGCCACAGCAGCCATAGCCACGGGGGC
CACAGCCACGGTGTGTCCCTGCAGCTGGCACCCAGCGAGCTCCGGCAGCCCAAGCCCCCCCACGAGGGCT
CCCGCGCAGACCTGGTGGCGGAGGAGAGCCCGGAGCTGCTGAACCCTGAGCCCAGGAGACTGAGCCCAGA
GTTGAGGCTACTGCCCTATATGATCACTCTGGGCGACGCCGTGCACAACTTCGCCGACGGGCTGGCCGTG
GGCGCCGCCTTCGCGTCCTCCTGGAAGACCGGGCTGGCCACCTCGCTGGCCGTGTTCTGCCACGAGTTGC
CACACGAGCTGGGGGACTTCGCCGCCTTGCTGCACGCGGGGCTGTCCGTGCGCCAAGCACTGCTGCTGAA
CCTGGCCTCCGCGCTCACGGCCTTCGCTGGTCTCTACGTGGCACTCGCGGTTGGAGTCAGCGAGGAGAGC
GAGGCCTGGATCCTGGCAGTGGCCACCGGCCTGTTCCTCTACGTAGCACTCTGCGACATGCTCCCGGCGA
TGTTGAAAGTACGGGACCCGCGGCCCTGGCTCCTCTTCCTGCTGCACAACGTGGGCCTGCTGGGCGGCTG
GACCGTCCTGCTGCTGCTGTCCCTGTACGAGGATGACATCACCTTCTGA

Translation (622 aa):
MVDVVGLERETGPRGSPWPGLPLPSLVGPAPLLTCLCPQCLSVEDALGLGEPEGSGLPPGPVLEARYVAR
LSAAAVLYLSNPEGTCEDARAGLWASHADHLLALLESPKALTPGLSWLLQRMQARAAGQTPKMACVDIPQ
LLEEAVGAGAPGSAGGVLAALLDHVRSGSCFHALPSPQYFVDFVFQQHSSEVPMTLAELSALMQRLGVGR
EAHSDHSHRHRGASSRDPVPLISSSNSSSVWDTVCLSARDVMAAYGLSEQAGVTPEAWAQLSPALLQQQL
SGACTSQSRPPVQDQLSQSERYLYGSLATLLICLCAVFGLLLLTCTGCRGVTHYILQTFLSLAVGAVTGD
AVLHLTPKVLGLHTHSEEGLSPQPTWRLLAMLAGLYAFFLFENLFNLLLPRDPEDLEDGPCGHSSHSHGG
HSHGVSLQLAPSELRQPKPPHEGSRADLVAEESPELLNPEPRRLSPELRLLPYMITLGDAVHNFADGLAV
GAAFASSWKTGLATSLAVFCHELPHELGDFAALLHAGLSVRQALLLNLASALTAFAGLYVALAVGVSEES
EAWILAVATGLFLYVALCDMLPAMLKVRDPRPWLLFLLHNVGLLGGWTVLLLLSLYEDDITF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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