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Report for CCDS13116.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13116.1 Public Homo sapiens 20 TASP1 24 110 108 CCDS HistoryNCBI Gene:55617Re-query CCDS DB by CCDS ID:13116.1Re-query CCDS DB by GeneID:55617See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13116.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337743.9 ENSP00000338624.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337743.9Link to Ensembl Protein Viewer:ENSP00000338624.4Re-query CCDS DB by Nucleotide ID:ENST00000337743Re-query CCDS DB by Protein ID:ENSP00000338624
Original member Current member NCBI NM_017714.3 NP_060184.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017714.3Link to Protein Sequence:NP_060184.2Re-query CCDS DB by Nucleotide ID:NM_017714Re-query CCDS DB by Protein ID:NP_060184Link to BLAST:NP_060184.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060184.2 420 Q9H6P5-1 420 100% 0 0

Chromosomal Locations for CCDS 13116.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 13390360 13390452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13417448 13417521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13435044 13435154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13483227 13483337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13528433 13528511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13534022 13534141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13559008 13559114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13569507 13569586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13580897 13580981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13587250 13587370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13623446 13623514 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13625185 13625252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 13629934 13630078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1263 nt):
ATGACCATGGAGAAGGGGATGAGTTCTGGAGAAGGGCTGCCTTCCAGATCATCTCAGGTTTCGGCTGGTA
AAATAACAGCCAAAGAGTTGGAAACAAAGCAGTCCTATAAAGAGAAACGAGGAGGCTTTGTGTTGGTGCA
TGCAGGTGCAGGTTATCATTCTGAATCCAAAGCCAAGGAGTATAAACATGTATGCAAACGAGCTTGTCAG
AAGGCAATTGAAAAGCTGCAGGCCGGTGCTCTTGCAACTGACGCAGTCACTGCAGCACTGGTGGAACTTG
AGGATTCTCCTTTTACAAATGCAGGAATGGGATCTAATCTAAATCTGTTAGGTGAAATTGAGTGTGATGC
CAGCATAATGGATGGAAAATCCTTAAATTTTGGAGCAGTTGGAGCACTGAGTGGAATCAAGAACCCAGTC
TCGGTTGCCAACAGACTCTTATGTGAAGGGCAGAAGGGCAAGCTCTCGGCTGGCAGAATTCCTCCCTGCT
TTTTAGTTGGAGAAGGAGCCTACAGATGGGCAGTAGATCATGGAATACCCTCTTGCCCTCCTAACATCAT
GACCACAAGATTCAGTTTAGCTGCATTTAAAAGAAACAAGAGGAAACTAGAGCTGGCAGAAAGGGTGGAC
ACAGATTTTATGCAACTAAAGAAAAGAAGACAATCAAGTGAGAAGGAAAATGACTCAGGCACTTTGGACA
CGGTAGGCGCTGTGGTTGTGGACCACGAAGGGAATGTTGCTGCTGCTGTCTCCAGTGGAGGCTTGGCCTT
GAAACATCCGGGGAGAGTTGGGCAGGCTGCTCTTTATGGATGTGGCTGCTGGGCTGAAAATACTGGAGCT
CATAACCCCTACTCCACAGCTGTGAGTACCTCAGGATGTGGAGAGCATCTTGTGCGCACCATACTGGCTA
GAGAATGTTCACATGCTTTACAAGCTGAGGATGCTCACCAAGCCCTGTTGGAGACTATGCAAAACAAGTT
TATCAGTTCACCTTTCCTTGCCAGTGAAGATGGCGTGCTTGGCGGAGTGATTGTCCTCCGTTCATGCAGA
TGTTCTGCCGAGCCTGACTCCTCCCAAAATAAGCAGACACTTCTAGTGGAATTTCTGTGGAGCCACACGA
CGGAGAGCATGTGTGTCGGATATATGTCAGCCCAGGATGGGAAAGCCAAGACTCACATTTCAAGACTTCC
TCCTGGTGCGGTGGCAGGACAGTCTGTGGCAATCGAAGGTGGGGTGTGCCGCCTGGAGAGCCCAGTGAAC
TGA

Translation (420 aa):
MTMEKGMSSGEGLPSRSSQVSAGKITAKELETKQSYKEKRGGFVLVHAGAGYHSESKAKEYKHVCKRACQ
KAIEKLQAGALATDAVTAALVELEDSPFTNAGMGSNLNLLGEIECDASIMDGKSLNFGAVGALSGIKNPV
SVANRLLCEGQKGKLSAGRIPPCFLVGEGAYRWAVDHGIPSCPPNIMTTRFSLAAFKRNKRKLELAERVD
TDFMQLKKRRQSSEKENDSGTLDTVGAVVVDHEGNVAAAVSSGGLALKHPGRVGQAALYGCGCWAENTGA
HNPYSTAVSTSGCGEHLVRTILARECSHALQAEDAHQALLETMQNKFISSPFLASEDGVLGGVIVLRSCR
CSAEPDSSQNKQTLLVEFLWSHTTESMCVGYMSAQDGKAKTHISRLPPGAVAGQSVAIEGGVCRLESPVN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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