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Report for CCDS7624.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7624.1 Public Homo sapiens 10 NSMCE4A 24 110 108 CCDS HistoryNCBI Gene:54780Re-query CCDS DB by CCDS ID:7624.1Re-query CCDS DB by GeneID:54780See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7624.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000369023.8 ENSP00000358019.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000369023.8Link to Ensembl Protein Viewer:ENSP00000358019.3Re-query CCDS DB by Nucleotide ID:ENST00000369023Re-query CCDS DB by Protein ID:ENSP00000358019
Original member Current member NCBI NM_017615.3 NP_060085.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017615.3Link to Protein Sequence:NP_060085.2Re-query CCDS DB by Nucleotide ID:NM_017615Re-query CCDS DB by Protein ID:NP_060085Link to BLAST:NP_060085.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060085.2 385 Q9NXX6-1 385 100% 0 0

Chromosomal Locations for CCDS 7624.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 121959336 121959410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121959501 121959595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121960358 121960406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121961423 121961517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121963238 121963328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121965286 121965385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121967655 121967806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121970939 121971069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121974004 121974081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 121974874 121975165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGTCTGGGGACAGCAGCGGCCGCGGGCCAGAGGGCCGGGGCCGGGGCCGCGACCCGCATCGGGATCGCA
CC
CGCTCCCGCTCCCGCTCGCGGTCCCCTTTGTCGCCCAGGTCCCGCCGCGGCTCTGCGCGGGAGCGCAG
A
GAGGCCCCAGAGCGCCCGAGCCTGGAGGACACAGAGCCGTCGGATTCCGGGGACGAGATGATGGACCCG
GCC
AGCTTGGAGGCGGAGGCCGACCAAGGCCTGTGCCGCCAGATCCGCCATCAGTACCGGGCGCTCATCA
AC
TCCGTCCAACAAAACCGTGAGGACATACTGAATGCCGGTGACAAATTAACAGAGGTCCTTGAAGAGGC
T
AACACTCTGTTTAATGAAGTGTCCCGAGCAAGAGAAGCAGTCCTGGATGCCCACTTTCTTGTTTTGGCT
TCA
GATTTGGGCAAAGAGAAAGCAAAGCAGCTGCGCTCAGACCTGAGCTCCTTTGACATGTTAAGATATG
TT
GAAACTCTACTCACACATATGGGTGTAAATCCGCTAGAAGCTGAAGAACTCATCCGTGATGAAGATAG
T
CCTGATTTTGAATTCATAGTCTATGACTCCTGGAAGATAACAGGCAGAACAGCAGAAAACACCTTTAAT
AAA
ACCCATACATTCCACTTTCTGTTGGGTTCAATATACGGAGAGTGCCCTGTGCCAAAGCCACGAGTTG
AT
CGTCCAAGAAAAGTTCCTGTGATACAAGAGGAGAGGGCAATGCCTGCCCAGTTAAGAAGAATGGAAGA
A
TCTCATCAAGAAGCAACAGAGAAAGAAGTAGAAAGAATCTTGGGATTGTTGCAGACATATTTTCGAGAA
GAT
CCTGATACCCCAATGTCCTTCTTTGACTTTGTGGTTGATCCTCATTCTTTCCCCCGTACAGTGGAAA
AC
ATCTTTCATGTTTCCTTCATTATACGGGATGGTTTTGCAAGAATAAGACTTGACCAAGACCGACTGCC
A
GTAATAGAGCCTGTTAGTATTAATGAAGAAAATGAGGGATTTGAACATAACACACAAGTTAGAAATCAA
GGA
ATTATAGCTTTGAGTTACCGTGACTGGGAGGAGATTGTGAAGACCTTTGAGATTTCAGAGCCTGTGA
TT
ACTCCAAGTCAGAGGCAGCAGAAGCCAAGTGCTTGA


Translation (385 aa):
MSGDSSGRGPEGRGRGRDPHRDRTRSRSRSRSPLSPRSRRGSARERREAPERPSLEDTEPSDSGDEMMDP
A
SLEAEADQGLCRQIRHQYRALINSVQ
QNREDILNAGDKLTEVLEEANTLFNEVSRAREAVLDAHFLVLA
S
DLGKEKAKQLRSDLSSFDMLRYVETL
LTHMGVNPLEAEELIRDEDSPDFEFIVYDSWKITGRTAENTFN
K
THTFHF
LLGSIYGECPVPKPRVDRPRKVPVIQEERAMPAQLRRMEESHQEATEKEVERILGLLQTYFRE
D
PDTPMSFFDFVVDPHSFPRTVENIFHVSFIIRDGFARIRLDQDRLPVIEPVSINEENEGFEHNTQVRNQ
G
IIALSYRDWE
EIVKTFEISEPVITPSQRQQKPSA



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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