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Report for CCDS29297.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
29297.1 Public Mus musculus 18 Txnl1 23 108 98 CCDS HistoryNCBI Gene:53382Re-query CCDS DB by CCDS ID:29297.1Re-query CCDS DB by GeneID:53382See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 29297.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000237004.1 ENSMUSP00000158375.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237004.1Link to Ensembl Protein Viewer:ENSMUSP00000158375.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237004Re-query CCDS DB by Protein ID:ENSMUSP00000158375
Original member Current member NCBI NM_016792.4 NP_058072.2 Accepted alive Link to Nucleotide Sequence:NM_016792.4Link to Protein Sequence:NP_058072.2Re-query CCDS DB by Nucleotide ID:NM_016792Re-query CCDS DB by Protein ID:NP_058072Link to BLAST:NP_058072.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058072.2 289 Q8CDN6 289 100% 0 0

Chromosomal Locations for CCDS 29297.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 63664303 63664332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63671582 63671686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63674049 63674221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63675444 63675513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63676879 63677001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63679353 63679526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63682211 63682307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 63692076 63692173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGGTGGGAGTGAAGCCGGTCGGGAGCGATCCAGATTTCCAGCCGGAGCTGAGCGGGGCGGGCTCCAGAC
TTGCCGTGGTCAAGTTCACCATGAGAGGGTGTGGACCGTGTCTTCGGATTGCCCCGGCGTTCAGCTCTAT
GAGTAATAAGTACCCACAGGCAGTCTTCTTGGAAGTAGATGTGCATCAGTGCCAGGGAACAGCTGCCACC
AACAACATATCAGCAACACCTACGTTTTTGTTTTTTCGAAACAAAGTGAGAATCGATCAGTATCAAGGAG
CAGATGCTGTGGGACTAGAAGAGAAAATCAAGCAGCACTTAGAAAATGATCCTGGAAGCAATGAGGACGC
AGACATTCCAAAGGGCTATATGGATTTAATGCCTTTTATTAACAAAGCTGGTTGTGAATGTCTTAATGAA
AGTGATGAGCACGGCTTTGACAACTGTTTACGAAAAGACATGTCCTTCTTGGAGTCTGACTGTGATGAGC
AGCTCCTTATTACTGTGGCATTCAATCAGCCTGTTAAGCTTTATTCCATGAAGTTTCAAGGACCAGATAA
CGGTCAGGGTCCTAAATATGTAAAAATTTTTATCAACCTACCCCGATCTATGGATTTTGAGGAGGCGGAA
AGGAGTGAGCCAACTCAAGCTCTGGAACTGACAGAAGATGACATTAAAGAAGATGGCATTGTTCCTCTTC
GTTATGTTAAATTTCAGAATGTCAACAGTGTAACTTTATTTGTTCAGTCTAATCAAGGAGAAGAAGAAAC
AACGAGAATTTCATATTTTACTTTCATTGGTACTCCAGTCCAGGCAACAAATATGAATGACTTCAAACGA
GTGGTTGGCAAAAAAGGGGAAAGCCATTAG

Translation (289 aa):
MVGVKPVGSDPDFQPELSGAGSRLAVVKFTMRGCGPCLRIAPAFSSMSNKYPQAVFLEVDVHQCQGTAAT
NNISATPTFLFFRNKVRIDQYQGADAVGLEEKIKQHLENDPGSNEDADIPKGYMDLMPFINKAGCECLNE
SDEHGFDNCLRKDMSFLESDCDEQLLITVAFNQPVKLYSMKFQGPDNGQGPKYVKIFINLPRSMDFEEAE
RSEPTQALELTEDDIKEDGIVPLRYVKFQNVNSVTLFVQSNQGEEETTRISYFTFIGTPVQATNMNDFKR
VVGKKGESH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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