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Report for CCDS1947.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1947.1 Public Homo sapiens 2 TLX2 24 110 108 CCDS HistoryNCBI Gene:3196Re-query CCDS DB by CCDS ID:1947.1Re-query CCDS DB by GeneID:3196See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1947.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000233638.8 ENSP00000233638.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000233638.8Link to Ensembl Protein Viewer:ENSP00000233638.6Re-query CCDS DB by Nucleotide ID:ENST00000233638Re-query CCDS DB by Protein ID:ENSP00000233638
Original member Current member NCBI NM_016170.5 NP_057254.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_016170.5Link to Protein Sequence:NP_057254.1Re-query CCDS DB by Nucleotide ID:NM_016170Re-query CCDS DB by Protein ID:NP_057254Link to BLAST:NP_057254.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_057254.1 284 O43763 284 100% 0 0

Chromosomal Locations for CCDS 1947.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 74514807 74515206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74515633 74515870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74515973 74516189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGGAGCCGGGGATGCTGGGTCCACACAACCTCCCACACCACGAGCCAATCAGCTTCGGCATCGATCAGA
TCCTGAGCGGCCCCGAAACCCCAGGGGGCGGTCTAGGCCTGGGTCGCGGGGGCCAGGGTCATGGGGAGAA
TGGGGCGTTCTCGGGTGGATACCACGGAGCCTCGGGCTACGGTCCCGCCGGCTCACTTGCCCCGCTGCCC
GGCAGCTCCGGAGTGGGCCCAGGCGGCGTGATCCGCGTCCCTGCGCACCGCCCGCTGCCTGTGCCGCCGC
CCGCTGGGGGGGCGCCTGCAGTGCCTGGGCCCTCGGGTTTGGGCGGCGCCGGAGGCCTAGCGGGACTCAC
CTTCCCCTGGATGGACAGCGGCCGCCGCTTTGCCAAGGACCGGCTCACGGCTGCGCTCTCGCCCTTCTCT
GGGACGCGCCGCATAGGCCACCCCTACCAAAACCGGACCCCTCCGAAGCGGAAGAAGCCGCGCACGTCCT
TCTCCCGCTCACAGGTGCTGGAGTTGGAGCGGCGCTTCCTGCGCCAGAAGTACCTGGCCTCTGCGGAGAG
GGCGGCGCTGGCCAAGGCCTTGCGCATGACCGACGCACAGGTCAAAACGTGGTTCCAGAACCGACGCACC
AAGTGGCGGCGCCAGACGGCGGAGGAGCGCGAGGCCGAGCGGCACCGCGCGGGCCGGCTGCTCCTGCATC
TGCAGCAGGACGCGTTGCCACGGCCGCTGCGGCCGCCGCTGCCCCCGGACCCTCTCTGCCTGCACAACTC
GTCGCTCTTCGCGCTGCAGAACCTGCAGCCCTGGGCCGAGGACAACAAAGTGGCTTCAGTGTCCGGGCTC
GCCTCGGTGGTGTGA

Translation (284 aa):
MEPGMLGPHNLPHHEPISFGIDQILSGPETPGGGLGLGRGGQGHGENGAFSGGYHGASGYGPAGSLAPLP
GSSGVGPGGVIRVPAHRPLPVPPPAGGAPAVPGPSGLGGAGGLAGLTFPWMDSGRRFAKDRLTAALSPFS
GTRRIGHPYQNRTPPKRKKPRTSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRT
KWRRQTAEEREAERHRAGRLLLHLQQDALPRPLRPPLPPDPLCLHNSSLFALQNLQPWAEDNKVASVSGL
ASVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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