NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47258.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47258.1 Public Homo sapiens 5 TNFAIP8 24 110 108 CCDS HistoryNCBI Gene:25816Re-query CCDS DB by CCDS ID:47258.1Re-query CCDS DB by GeneID:25816See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47258.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000503646.1 ENSP00000421848.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000503646.1Link to Ensembl Protein Viewer:ENSP00000421848.1Re-query CCDS DB by Nucleotide ID:ENST00000503646Re-query CCDS DB by Protein ID:ENSP00000421848
Original member Current member EBI ENST00000504771.3 ENSP00000422245.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000504771.3Link to Ensembl Protein Viewer:ENSP00000422245.1Re-query CCDS DB by Nucleotide ID:ENST00000504771Re-query CCDS DB by Protein ID:ENSP00000422245
Original member Current member NCBI NM_001286813.2 NP_001273742.1 Accepted alive Link to Nucleotide Sequence:NM_001286813.2Link to Protein Sequence:NP_001273742.1Re-query CCDS DB by Nucleotide ID:NM_001286813Re-query CCDS DB by Protein ID:NP_001273742Link to BLAST:NP_001273742.1
Original member Current member NCBI NM_014350.4 NP_055165.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014350.4Link to Protein Sequence:NP_055165.2Re-query CCDS DB by Nucleotide ID:NM_014350Re-query CCDS DB by Protein ID:NP_055165Link to BLAST:NP_055165.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273742.1 198 O95379-1 198 100% 0 0
NP_055165.2 198 O95379-1 198 100% 0 0

Chromosomal Locations for CCDS 47258.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 119356091 119356121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 119392816 119393381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGCACTCCGAAGCAGAAGAATCCAAGGAAGTGGCCACAGATGTCTTTAATTCCAAAAACCTGGCCGTTC
AGGCACAAAAGAAGATCTTGGGTAAAATGGTGTCCAAATCCATCGCCACCACCTTAATAGACGACACAAG
TAGTGAGGTGCTGGATGAGCTCTACAGAGTGACCAGGGAGTACACCCAAAACAAGAAGGAGGCAGAGAAG
ATCATCAAGAACCTCATCAAGACAGTCATCAAGCTGGCCATTCTTTATAGGAATAATCAGTTTAATCAAG
ATGAGCTAGCATTGATGGAGAAATTTAAGAAGAAAGTTCATCAGCTTGCTATGACCGTGGTCAGTTTCCA
TCAGGTGGATTATACCTTTGACCGGAATGTGTTATCCAGGCTGTTAAATGAATGCAGAGAGATGCTGCAC
CAAATCATTCAGCGCCACCTCACTGCCAAGTCACATGGACGGGTTAATAATGTGTTTGATCATTTTTCAG
ATTGTGAATTTTTGGCTGCCTTGTATAATCCTTTTGGGAATTTTAAACCCCACTTACAAAAACTATGTGA
TGGTATCAACAAAATGTTGGATGAAGAGAACATATGA

Translation (198 aa):
MHSEAEESKEVATDVFNSKNLAVQAQKKILGKMVSKSIATTLIDDTSSEVLDELYRVTREYTQNKKEAEK
IIKNLIKTVIKLAILYRNNQFNQDELALMEKFKKKVHQLAMTVVSFHQVDYTFDRNVLSRLLNECREMLH
QIIQRHLTAKSHGRVNNVFDHFSDCEFLAALYNPFGNFKPHLQKLCDGINKMLDEENI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH