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Report for CCDS28570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28570.1 Public Mus musculus 17 Snrpc 23 108 98 CCDS HistoryNCBI Gene:20630Re-query CCDS DB by CCDS ID:28570.1Re-query CCDS DB by GeneID:20630See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28570.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071006.8 ENSMUSP00000063976.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071006.8Link to Ensembl Protein Viewer:ENSMUSP00000063976.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000071006Re-query CCDS DB by Protein ID:ENSMUSP00000063976
Original member Current member EBI ENSMUST00000232873.1 ENSMUSP00000156707.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000232873.1Link to Ensembl Protein Viewer:ENSMUSP00000156707.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000232873Re-query CCDS DB by Protein ID:ENSMUSP00000156707
Original member NCBI NM_011432.2 NP_035562.1 Updated not alive Link to Nucleotide Sequence:NM_011432.2Link to Protein Sequence:NP_035562.1Re-query CCDS DB by Nucleotide ID:NM_011432Re-query CCDS DB by Protein ID:NP_035562
Current member NCBI NM_011432.3 NP_035562.1 Accepted alive Link to Nucleotide Sequence:NM_011432.3Link to Protein Sequence:NP_035562.1Re-query CCDS DB by Nucleotide ID:NM_011432Re-query CCDS DB by Protein ID:NP_035562Link to BLAST:NP_035562.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035562.1 159 Q62241 159 100% 0 0

Chromosomal Locations for CCDS 28570.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 27840162 27840169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27840464 27840506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27842270 27842378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27845183 27845272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27847953 27848057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 27851638 27851762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (480 nt):
ATGCCCAAGTTTTATTGTGACTACTGTGATACGTATCTTACCCACGATTCTCCATCTGTGAGGAAGACAC
ACTGCAGTGGTCGGAAACACAAAGAGAATGTGAAAGACTATTATCAGAAATGGATGGAAGAGCAGGCCCA
GAGCCTGATTGACAAGACAACGGCTGCATTTCAACAAGGGAAGATCCCTCCTGCTCCGTTCTCTGCTCCT
CCGCCTGCAGGGGCCATGATCCCACCTCCCCCCAGTCTCCCGGGCCCTCCTCGGCCTGGCATGATGCCTG
CCCCCCACATGGGAGGCCCTCCCATGATGCCAATGATGGGCCCCCCTCCGCCCGGAATGATGCCCGTGGG
ACCAGCTCCTGGGATGAGACCACCCATGGGAGGCCACATGCCCATGATGCCCGGACCTCCCATGATGAGA
CCTCCTGCCCGCCCTATGATGGTGCCCACCCGGCCTGGCATGACCCGGCCAGACAGATAA

Translation (159 aa):
MPKFYCDYCDTYLTHDSPSVRKTHCSGRKHKENVKDYYQKWMEEQAQSLIDKTTAAFQQGKIPPAPFSAP
PPAGAMIPPPPSLPGPPRPGMMPAPHMGGPPMMPMMGPPPPGMMPVGPAPGMRPPMGGHMPMMPGPPMMR
PPARPMMVPTRPGMTRPDR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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