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Report for CCDS20502.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20502.1 Public Mus musculus 6 Slc2a3 23 108 98 CCDS HistoryNCBI Gene:20527Re-query CCDS DB by CCDS ID:20502.1Re-query CCDS DB by GeneID:20527See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20502.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032476.10 ENSMUSP00000032476.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032476.10Link to Ensembl Protein Viewer:ENSMUSP00000032476.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032476Re-query CCDS DB by Protein ID:ENSMUSP00000032476
Original member NCBI NM_011401.4 NP_035531.3 Updated not alive Link to Nucleotide Sequence:NM_011401.4Link to Protein Sequence:NP_035531.3Re-query CCDS DB by Nucleotide ID:NM_011401Re-query CCDS DB by Protein ID:NP_035531
Current member NCBI NM_011401.5 NP_035531.3 Accepted alive Link to Nucleotide Sequence:NM_011401.5Link to Protein Sequence:NP_035531.3Re-query CCDS DB by Nucleotide ID:NM_011401Re-query CCDS DB by Protein ID:NP_035531Link to BLAST:NP_035531.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035531.3 493 P32037 493 100% 0 0

Chromosomal Locations for CCDS 20502.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 122729931 122730140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122731393 122731596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122732371 122732472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122732770 122732874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122735423 122735610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122736579 122736741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122737058 122737298 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122739833 122739993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122740388 122740480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 122742376 122742390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGGGGACAACGAAGGTGACCCCATCTCTGGTGTTCGCCGTGACTGTTGCCACGATCGGCTCTTTCCAGT
TTGGCTACAACACTGGAGTCATCAATGCACCTGAGACAATCCTAAAGGACTTTCTTAACTACACTTTGGA
AGAGCGGTTAGAAGACCTACCAAGTGAGGGACTGCTGACTGCCCTCTGGTCCTTATGTGTGGCCATCTTC
TCTGTTGGTGGCATGATTGGCTCTTTTTCTGTTGGACTCTTTGTCAACCGCTTTGGCAGACGCAACTCTA
TGCTTCTAGTCAACTTGCTGGCCATCATTGCGGGCTGCCTTATGGGATTCGCCAAGATAGCGGAGTCTGT
TGAAATGCTGATCCTGGGCCGCTTACTCATTGGCATTTTCTGTGGCCTGTGCACGGGCTTTGTGCCTATG
TACATTGGAGAGGTGTCTCCCACTGCCCTTCGGGGTGCATTTGGCACACTAAACCAGCTGGGCATCGTTG
TTGGGATTCTGGTAGCTCAGATCTTTGGTTTGGACTTTATTCTGGGCTCTGAAGAACTGTGGCCTGGGCT
CCTTGGCTTAACCATCATTCCAGCTATCCTGCAAAGCGCAGCCCTTCCATTTTGCCCTGAGAGTCCAAGA
TTCTTGCTCATTAACAAAAAGGAGGAAGACCAAGCTACAGAGATCCTGCAGCGCTTGTGGGGCACCTCGG
ACGTGGTCCAGGAGATCCAGGAGATGAAGGATGAGAGTGTTCGGATGTCACAGGAGAAGCAGGTGACTGT
GCTGGAGCTCTTCAGGTCACCCAACTACGTCCAGCCGCTTCTCATCTCCATTGTCCTCCAGCTGTCTCAG
CAGCTCTCTGGGATCAATGCTGTGTTCTATTACTCAACAGGAATCTTCAAGGACGCGGGTGTCCAGGAAC
CGATCTATGCCACGATTGGAGCAGGCGTGGTCAATACTATCTTCACTGTAGTTTCTCTGTTCCTGGTGGA
GAGGGCAGGGAGGAGAACCCTGCATATGATAGGCCTGGGAGGCATGGCTGTTTGCTCCGTTTTCATGACG
ATTTCGCTGTTACTAAAGGATGACTATGAAGCCATGAGCTTTGTCTGTATTGTGGCTATCTTGATCTACG
TAGCCTTCTTTGAGATTGGACCTGGCCCCATTCCCTGGTTTATTGTGGCTGAGCTCTTCAGCCAGGGCCC
CCGCCCAGCTGCCATTGCGGTGGCTGGCTGTTGTAACTGGACCTCCAACTTTCTGGTCGGAATGCTCTTC
CCCTCAGCTGCAGCCTACTTAGGAGCCTACGTTTTTATCATCTTCGCTGCCTTCCTCATCTTCTTCCTAA
TCTTCACCTTCTTCAAAGTCCCGGAGACCAAAGGCAGGACTTTCGAGGACATTGCCCGGGCCTTCGAGGG
GCAGGCGCACTCTGGAAAAGGCCCTGCCGGTGTGGAGTTGAACAGCATGCAGCCGGTCAAGGAGACCCCT
GGCAACGCCTGA

Translation (493 aa):
MGTTKVTPSLVFAVTVATIGSFQFGYNTGVINAPETILKDFLNYTLEERLEDLPSEGLLTALWSLCVAIF
SVGGMIGSFSVGLFVNRFGRRNSMLLVNLLAIIAGCLMGFAKIAESVEMLILGRLLIGIFCGLCTGFVPM
YIGEVSPTALRGAFGTLNQLGIVVGILVAQIFGLDFILGSEELWPGLLGLTIIPAILQSAALPFCPESPR
FLLINKKEEDQATEILQRLWGTSDVVQEIQEMKDESVRMSQEKQVTVLELFRSPNYVQPLLISIVLQLSQ
QLSGINAVFYYSTGIFKDAGVQEPIYATIGAGVVNTIFTVVSLFLVERAGRRTLHMIGLGGMAVCSVFMT
ISLLLKDDYEAMSFVCIVAILIYVAFFEIGPGPIPWFIVAELFSQGPRPAAIAVAGCCNWTSNFLVGMLF
PSAAAYLGAYVFIIFAAFLIFFLIFTFFKVPETKGRTFEDIARAFEGQAHSGKGPAGVELNSMQPVKETP
GNA


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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