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Report for CCDS25742.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25742.1 Public Mus musculus 11 P4hb 23 108 98 CCDS HistoryNCBI Gene:18453Re-query CCDS DB by CCDS ID:25742.1Re-query CCDS DB by GeneID:18453See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25742.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026122.10 ENSMUSP00000026122.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026122.10Link to Ensembl Protein Viewer:ENSMUSP00000026122.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000026122Re-query CCDS DB by Protein ID:ENSMUSP00000026122
Original member Current member NCBI NM_011032.3 NP_035162.1 Accepted alive Link to Nucleotide Sequence:NM_011032.3Link to Protein Sequence:NP_035162.1Re-query CCDS DB by Nucleotide ID:NM_011032Re-query CCDS DB by Protein ID:NP_035162Link to BLAST:NP_035162.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035162.1 509 P09103 509 100% 0 0

Chromosomal Locations for CCDS 25742.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 120561183 120561260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120562161 120562247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120562364 120562545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120562655 120562775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120563205 120563405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120563603 120563728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120563816 120563920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120567918 120568055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120568174 120568307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120571521 120571727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 120572657 120572807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1530 nt):
ATGCTGAGCCGTGCTTTGCTGTGCCTAGCCCTGGCCTGGGCGGCTAGGGTGGGCGCCGACGCCCTGGAGG
AGGAGGACAACGTCCTGGTGTTGAAGAAGAGCAACTTCGAGGAGGCGCTGGCGGCGCACAAGTACCTGCT
GGTGGAGTTCTATGCCCCGTGGTGTGGCCACTGCAAAGCTCTGGCTCCCGAGTATGCCAAAGCTGCCGCA
AAACTGAAGGCAGAAGGCTCTGAGATTCGACTAGCAAAGGTGGATGCCACAGAAGAGTCTGACCTGGCTC
AGCAGTATGGTGTCCGTGGCTACCCCACAATCAAGTTCTTCAAGAATGGAGACACAGCCTCCCCAAAGGA
ATATACAGCTGGCAGGGAAGCTGATGACATTGTCAACTGGCTGAAGAAACGCACGGGCCCAGCAGCTACA
ACCCTGTCTGACACTGCAGCTGCAGAGTCCTTGGTGGACTCAAGCGAAGTGACGGTCATCGGTTTCTTCA
AGGACGTAGAGTCAGACTCTGCCAAGCAGTTCTTGCTGGCAGCAGAGGCTATTGATGACATACCTTTTGG
AATCACGTCCAACAGTGGTGTGTTCTCCAAGTACCAGCTGGACAAAGATGGGGTGGTCCTCTTTAAGAAG
TTTGATGAAGGCCGCAACAACTTTGAGGGTGAGATCACCAAGGAGAAGCTTCTAGACTTCATCAAGCACA
ATCAGCTGCCTTTGGTCATCGAGTTCACTGAACAGACAGCTCCGAAGATTTTTGGAGGTGAGATCAAGAC
ACACATTCTGCTGTTCCTGCCCAAGAGTGTATCTGACTATGACGGCAAGCTGAGCAGCTTCAAGAGAGCA
GCCGAGGGCTTCAAGGGCAAGATCCTATTTATCTTCATCGATAGCGACCACACTGATAACCAGCGCATAC
TTGAGTTCTTTGGCCTGAAGAAGGAGGAGTGTCCCGCTGTGCGGCTTATTACCCTAGAGGAAGAGATGAC
CAAGTACAAACCAGAGTCAGATGAGCTGACGGCTGAGAAAATCACAGAGTTTTGCCACCGCTTCTTAGAG
GGCAAGATCAAGCCCCACCTGATGAGCCAAGAAGTGCCTGAAGACTGGGACAAACAGCCGGTAAAAGTAC
TGGTTGGGGCGAACTTTGAAGAGGTCGCTTTTGATGAGAAAAAGAACGTGTTTGTTGAATTCTATGCCCC
TTGGTGTGGTCACTGCAAGCAGCTAGCCCCCATTTGGGATAAACTGGGAGAGACATACAAGGATCATGAG
AATATCATCATTGCTAAGATGGACTCAACAGCCAATGAGGTGGAAGCTGTCAAAGTACATAGCTTTCCCA
CACTGAAGTTCTTCCCAGCAAGTGCAGACAGAACGGTCATTGATTACAACGGCGAGCGGACACTGGACGG
TTTTAAGAAATTCTTGGAGAGTGGTGGCCAGGATGGAGCAGGGGACGATGAGGACCTCGACCTAGAAGAA
GCTTTAGAGCCAGACATGGAGGAAGACGACGATCAGAAAGCTGTGAAGGATGAACTGTAG

Translation (509 aa):
MLSRALLCLALAWAARVGADALEEEDNVLVLKKSNFEEALAAHKYLLVEFYAPWCGHCKALAPEYAKAAA
KLKAEGSEIRLAKVDATEESDLAQQYGVRGYPTIKFFKNGDTASPKEYTAGREADDIVNWLKKRTGPAAT
TLSDTAAAESLVDSSEVTVIGFFKDVESDSAKQFLLAAEAIDDIPFGITSNSGVFSKYQLDKDGVVLFKK
FDEGRNNFEGEITKEKLLDFIKHNQLPLVIEFTEQTAPKIFGGEIKTHILLFLPKSVSDYDGKLSSFKRA
AEGFKGKILFIFIDSDHTDNQRILEFFGLKKEECPAVRLITLEEEMTKYKPESDELTAEKITEFCHRFLE
GKIKPHLMSQEVPEDWDKQPVKVLVGANFEEVAFDEKKNVFVEFYAPWCGHCKQLAPIWDKLGETYKDHE
NIIIAKMDSTANEVEAVKVHSFPTLKFFPASADRTVIDYNGERTLDGFKKFLESGGQDGAGDDEDLDLEE
ALEPDMEEDDDQKAVKDEL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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