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Report for CCDS18857.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
18857.1 Public Mus musculus 4 Padi2 23 108 98 CCDS HistoryNCBI Gene:18600Re-query CCDS DB by CCDS ID:18857.1Re-query CCDS DB by GeneID:18600See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 18857.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030765.6 ENSMUSP00000030765.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030765.6Link to Ensembl Protein Viewer:ENSMUSP00000030765.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000030765Re-query CCDS DB by Protein ID:ENSMUSP00000030765
Original member NCBI NM_008812.2 NP_032838.2 Updated not alive Link to Nucleotide Sequence:NM_008812.2Link to Protein Sequence:NP_032838.2Re-query CCDS DB by Nucleotide ID:NM_008812Re-query CCDS DB by Protein ID:NP_032838
Current member NCBI NM_008812.3 NP_032838.2 Accepted alive Link to Nucleotide Sequence:NM_008812.3Link to Protein Sequence:NP_032838.2Re-query CCDS DB by Nucleotide ID:NM_008812Re-query CCDS DB by Protein ID:NP_032838Link to BLAST:NP_032838.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032838.2 673 Q08642 673 100% 0 0

Chromosomal Locations for CCDS 18857.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 140906434 140906549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140917573 140917756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140919308 140919380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140924314 140924375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140926136 140926253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140927093 140927218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140932065 140932243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140932747 140932850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140933173 140933284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140934616 140934723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140936520 140936671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140937920 140938064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140944442 140944535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140946678 140946763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140949212 140949340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 140949691 140949924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2022 nt):
ATGCAGCCGCCTATACGGGAAAATATGCTGCGGGAACGGACCGTGCGGCTGCAGTATGGGAGCCGCGTGG
AGGCGGTGTACGTGCTGGGCACGCAGCTCTGGACCGATGTCTACAGTGCAGCACCTGCTGGGGCCAAAAC
CTTCAGCCTGAAGCACTCGGAAGGTGTGAAGGTGGAGGTCGTACGTGATGGAGAGGCAGAGGAGGTGGTC
ACCAACGGCAAGCAGCGCTGGGCCCTGTCACCCAGCAGCACACTGCGGCTCAGCATGGCCCAGGCCAGCA
CAGAGGCCAGCAGCGACAAGGTCACTGTCAACTACTATGAAGAGGAGGGCAGCGCCCCCATTGACCAGGC
TGGGCTCTTCCTCACGGCCATTGAGATCTCGCTGGATGTGGACGCAGATCGGGATGGAGAGGTGGAGAAG
AACAATCCTAAGAAGGCATCCTGGACCTGGGGTCCTGAGGGCCAAGGGGCTATCCTGCTGGTGAATTGTG
ACCGAGACACACCCTGGTTGCCCAAGGAGGACTGTAGTGACGAAAAGGTCTACAGCAAGCAAGACCTCCA
GGACATGTCTCAGATGATCCTGCGCACCAAAGGCCCTGACCGCCTGCCCGCCGGGTATGAAATAGTCCTC
TACATCTCCATGTCAGACTCGGACAAAGTGGGCGTCTTCTACGTGGAGAACCCGTTCTTTGGCCAGCGCT
ATATCCACATCCTGGGCCGGCAGAAGCTCTACCACGTGGTCAAGTACACCGGCGGTTCTGCGGAGTTGCT
GTTCTTTGTGGAAGGCCTCTGTTTCCCCGACGAGAGTTTCTCAGGCCTGGTTTCTATCCACGTCAGTCTG
CTGGAGTATATGGCCGAGGGCATCCCGTTGACCCCCATCTTCACAGACACTGTGATGTTCCGGATTGCAC
CCTGGATTATGACCCCCAACATCTTGCCTCCTGTGTCAGTGTTCGTGTGCTGCATGAAGGATAATTACCT
GTTCCTGAAAGAGGTGAAGAACTTGGTGGAGAAAACCAACTGCGAACTGAAAGTTTGTTTCCAGTACATG
AACCGCGGTGACCGCTGGATCCAGGATGAAATCGAGTTTGGCTACATTGAGGCACCCCACAAAGGCTTCC
CAGTAGTGCTGGACTCCCCTCGAGATGGAAACCTGAAGGACTTCCCCATTAAGCAACTCCTGGGCCCAGA
TTTCGGCTATGTGACCCGGGAGCCCCTCTTTGAGACTGTCACCAGCCTCGACTCCTTCGGGAATCTGGAG
GTCAGTCCCCCAGTGACCGTGAATGGCAAGGAGTACCCGCTTGGCCGGATCCTCATCGGAAGCAGTTTCC
CCCTGTCTGGAGGCAGGAGGATGACCAAGGTGGTACGCGACTTCCTGCAGGCCCAGCAGGTGCAGGCGCC
CGTGGAACTCTACTCCGACTGGCTGACTGTAGGCCACGTCGATGAGTTTATGACTTTCATCCCCATCCCA
GGCAAAAAGGAATTTCGGCTGCTCATGGCCAGCACCTCCGCCTGCTACCAGCTCTTCCGAGAAAAGCAGA
AGGCAGGCCACGGGGAGGCCGTTATGTTCAAGGGCCTGGGAGGCATGAGCAGCAAGCGCATCACCATCAA
CAAGATCCTGTCCAATGAGAGCCTCACGCAGGAGAACCAGTACTTCCAGCGCTGTCTGGACTGGAACCGC
GACATCCTTAAGAGGGAGCTAGCGCTGACTGAGAAGGACATTATTGACCTGCCCGCGCTCTTCAAGATGG
ATGAAAATCACCAGGCCAGGGCTTTCTTCCCTAACATGGTGAACATGATCGTGCTAGACAAGGACCTGGG
CATCCCCAAGCCTTTCGGGCCCCAGGTGGAGGAGGAGTGCTGCCTGGAGACGCACGTTCGAGGCCTGCTG
GAGCCCCTGGGCCTCGCCTGCACGTTCATCGATGACATCTCCGCCTACCACAAGTTCCTGGGAGAGGTTC
ACTGTGGCACCAATGTCCGCAGGAAGCCGTTCACCTTCAAGTGGTGGCACATGGTGCCCTGA

Translation (673 aa):
MQPPIRENMLRERTVRLQYGSRVEAVYVLGTQLWTDVYSAAPAGAKTFSLKHSEGVKVEVVRDGEAEEVV
TNGKQRWALSPSSTLRLSMAQASTEASSDKVTVNYYEEEGSAPIDQAGLFLTAIEISLDVDADRDGEVEK
NNPKKASWTWGPEGQGAILLVNCDRDTPWLPKEDCSDEKVYSKQDLQDMSQMILRTKGPDRLPAGYEIVL
YISMSDSDKVGVFYVENPFFGQRYIHILGRQKLYHVVKYTGGSAELLFFVEGLCFPDESFSGLVSIHVSL
LEYMAEGIPLTPIFTDTVMFRIAPWIMTPNILPPVSVFVCCMKDNYLFLKEVKNLVEKTNCELKVCFQYM
NRGDRWIQDEIEFGYIEAPHKGFPVVLDSPRDGNLKDFPIKQLLGPDFGYVTREPLFETVTSLDSFGNLE
VSPPVTVNGKEYPLGRILIGSSFPLSGGRRMTKVVRDFLQAQQVQAPVELYSDWLTVGHVDEFMTFIPIP
GKKEFRLLMASTSACYQLFREKQKAGHGEAVMFKGLGGMSSKRITINKILSNESLTQENQYFQRCLDWNR
DILKRELALTEKDIIDLPALFKMDENHQARAFFPNMVNMIVLDKDLGIPKPFGPQVEEECCLETHVRGLL
EPLGLACTFIDDISAYHKFLGEVHCGTNVRRKPFTFKWWHMVP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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