NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17652.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17652.1 Public Mus musculus 3 Gja5 23 108 98 CCDS HistoryNCBI Gene:14613Re-query CCDS DB by CCDS ID:17652.1Re-query CCDS DB by GeneID:14613See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17652.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072600.6 ENSMUSP00000088264.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072600.6Link to Ensembl Protein Viewer:ENSMUSP00000088264.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000072600Re-query CCDS DB by Protein ID:ENSMUSP00000088264
Original member Current member NCBI NM_001271628.1 NP_001258557.1 Accepted alive Link to Nucleotide Sequence:NM_001271628.1Link to Protein Sequence:NP_001258557.1Re-query CCDS DB by Nucleotide ID:NM_001271628Re-query CCDS DB by Protein ID:NP_001258557Link to BLAST:NP_001258557.1
Original member Current member NCBI NM_008121.3 NP_032147.1 Accepted alive Link to Nucleotide Sequence:NM_008121.3Link to Protein Sequence:NP_032147.1Re-query CCDS DB by Nucleotide ID:NM_008121Re-query CCDS DB by Protein ID:NP_032147Link to BLAST:NP_032147.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001258557.1 358 Q01231 358 100% 0 0
NP_032147.1 358 Q01231 358 100% 0 0

Chromosomal Locations for CCDS 17652.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 97050629 97051705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1077 nt):
ATGGGTGACTGGAGCTTCCTGGGGGAGTTCCTGGAGGAGGTCCACAAGCACTCCACAGTCATCGGCAAGG
TCTGGCTCACTGTCCTGTTCATTTTCCGCATGCTGGTCCTGGGCACCGCTGCTGAGTCCTCCTGGGGAGA
TGAGCAGGCCGACTTCCGGTGCGATACCATTCAGCCTGGTTGCCAAAATGTCTGCTATGACCAAGCCTTC
CCCATCTCCCACATTCGTTATTGGGTACTGCAGATCATCTTTGTGTCCACGCCTTCTCTAGTGTACATGG
GCCATGCCATGCACACTGTGCGCATGCAGGAAAAGCAGAAATTGCGGGATGCTGAGAAAGCTAAAGAGGC
CCACCGCACTGGTGCCTATGAGTACCCAGTAGCCGAAAAGGCCGAGCTGTCCTGCTGGAAAGAAGTAGAT
GGGAAGATTGTCCTCCAGGGCACCCTACTCAACACCTATGTCTGCACCATTCTGATCCGCACCACCATGG
AGGTGGCCTTCATCGTAGGCCAGTACCTCCTCTATGGGATCTTCCTGGATACCCTGCATGTCTGCCGCAG
GAGTCCCTGTCCCCACCCAGTCAACTGTTATGTTTCGAGGCCCACGGAGAAGAATGTCTTCATTGTCTTT
ATGATGGCTGTGGCTGGACTGTCTCTGTTTCTCAGCCTGGCTGAACTCTACCACCTGGGCTGGAAGAAGA
TCCGACAGCGCTTTGGCAAGTCACGGCAGGGTGTGGACAAGCACCAGCTGCCTGGCCCTCCCACCAGCCT
CGTCCAGAGCCTCACTCCTCCCCCTGACTTCAATCAGTGCCTAAAGAACAGCTCCGGAGAGAAATTCTTC
AGCGACTTCAGTAATAACATGGGCTCCCGGAAGAATCCAGACGCTCTGGCCACTGGGGAAGTGCCAAACC
AGGAGCAGATTCCAGGGGAAGGCTTCATCCACATGCACTATAGCCAGAAGCCAGAGTACGCCAGTGGAGC
CTCTGCGGGCCACCGCCTTCCTCAGGGCTACCATAGTGACAAACGGCGCCTTAGTAAGGCCAGCAGCAAA
GCAAGGTCAGATGACCTGTCAGTGTGA

Translation (358 aa):
MGDWSFLGEFLEEVHKHSTVIGKVWLTVLFIFRMLVLGTAAESSWGDEQADFRCDTIQPGCQNVCYDQAF
PISHIRYWVLQIIFVSTPSLVYMGHAMHTVRMQEKQKLRDAEKAKEAHRTGAYEYPVAEKAELSCWKEVD
GKIVLQGTLLNTYVCTILIRTTMEVAFIVGQYLLYGIFLDTLHVCRRSPCPHPVNCYVSRPTEKNVFIVF
MMAVAGLSLFLSLAELYHLGWKKIRQRFGKSRQGVDKHQLPGPPTSLVQSLTPPPDFNQCLKNSSGEKFF
SDFSNNMGSRKNPDALATGEVPNQEQIPGEGFIHMHYSQKPEYASGASAGHRLPQGYHSDKRRLSKASSK
ARSDDLSV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH