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Report for CCDS25890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25890.1 Public Mus musculus 12 Arl4a 23 108 98 CCDS HistoryNCBI Gene:11861Re-query CCDS DB by CCDS ID:25890.1Re-query CCDS DB by GeneID:11861See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25890.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000101472.3 ENSMUSP00000099013.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000101472.3Link to Ensembl Protein Viewer:ENSMUSP00000099013.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000101472Re-query CCDS DB by Protein ID:ENSMUSP00000099013
Original member Current member EBI ENSMUST00000146905.1 ENSMUSP00000114458.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000146905.1Link to Ensembl Protein Viewer:ENSMUSP00000114458.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000146905Re-query CCDS DB by Protein ID:ENSMUSP00000114458
Original member Current member NCBI NM_001039515.1 NP_001034604.1 Accepted alive Link to Nucleotide Sequence:NM_001039515.1Link to Protein Sequence:NP_001034604.1Re-query CCDS DB by Nucleotide ID:NM_001039515Re-query CCDS DB by Protein ID:NP_001034604Link to BLAST:NP_001034604.1
Original member Current member NCBI NM_007487.3 NP_031513.1 Accepted alive Link to Nucleotide Sequence:NM_007487.3Link to Protein Sequence:NP_031513.1Re-query CCDS DB by Nucleotide ID:NM_007487Re-query CCDS DB by Protein ID:NP_031513Link to BLAST:NP_031513.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001034604.1 200 P61213 200 100% 0 0
NP_031513.1 200 P61213 200 100% 0 0

Chromosomal Locations for CCDS 25890.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 40036144 40036746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGGGAATGGACTGTCAGACCAGACTTCCATCCTGTCCAGCCTGCCGTCCTTTCAGTCCTTTCACATTG
TTATTCTGGGTTTGGACTGTGCTGGAAAGACAACAGTTTTATACAGGCTGCAGTTCAACGAATTTGTAAA
TACCGTACCTACCAAAGGATTTAACACTGAGAAAATTAAGGTAACCTTGGGCAATTCCAAAACAGTCACT
TTTCACTTCTGGGATGTAGGTGGTCAAGAGAAGTTAAGACCACTGTGGAAGTCATACACCCGATGCACAG
ATGGTATTGTGTTTGTGGTGGACTCTGTCGATGTTGAGAGAATGGAAGAAGCCAAAACTGAACTTCATAA
AATAACTAGGATATCCGAAAATCAGGGAGTCCCTGTGCTTATAGTTGCTAATAAACAAGACCTGAGGAAC
TCGCTCTCTCTCTCAGAGATTGAGAAGTTGTTAGCAATGGGGGAACTGAGCTCATCGACTCCTTGGCATT
TGCAGCCCACCTGTGCAATCATAGGAGATGGGCTAAAGGAAGGACTCGAGAAACTACATGATATGATAAT
TAAAAGGAGAAAAATGTTGCGGCAACAGAAAAAGAAGAGATGA

Translation (200 aa):
MGNGLSDQTSILSSLPSFQSFHIVILGLDCAGKTTVLYRLQFNEFVNTVPTKGFNTEKIKVTLGNSKTVT
FHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRISENQGVPVLIVANKQDLRN
SLSLSEIEKLLAMGELSSSTPWHLQPTCAIIGDGLKEGLEKLHDMIIKRRKMLRQQKKKR


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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