NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2678.1 Public Homo sapiens 3 XYLB 24 110 108 CCDS HistoryNCBI Gene:9942Re-query CCDS DB by CCDS ID:2678.1Re-query CCDS DB by GeneID:9942See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2678.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000207870.8 ENSP00000207870.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000207870.8Link to Ensembl Protein Viewer:ENSP00000207870.3Re-query CCDS DB by Nucleotide ID:ENST00000207870Re-query CCDS DB by Protein ID:ENSP00000207870
Original member Current member NCBI NM_005108.4 NP_005099.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005108.4Link to Protein Sequence:NP_005099.2Re-query CCDS DB by Nucleotide ID:NM_005108Re-query CCDS DB by Protein ID:NP_005099Link to BLAST:NP_005099.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005099.2 536 O75191-1 536 100% 0 0

Chromosomal Locations for CCDS 2678.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 38346869 38346925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38348550 38348632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38360339 38360408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38362937 38363017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38365199 38365285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38365608 38365736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38366808 38366873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38368185 38368257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38370056 38370174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38372655 38372736 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38374462 38374502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38375144 38375259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38376117 38376232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38376918 38376991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38379246 38379342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38395505 38395563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38397072 38397159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38400891 38400985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 38412936 38413013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1611 nt):
ATGGCGGAGCACGCCCCTCGCCGCTGCTGCCTGGGCTGGGACTTCAGCACGCAGCAGGTAAAGGTTGTTG
CTGTTGATGCAGAGTTGAATGTCTTCTATGAGGAAAGTGTGCATTTTGACAGAGATCTTCCAGAATTTGG
GACTCAGGGTGGTGTTCATGTGCACAAGGATGGGCTGACGGTCACTTCTCCAGTACTAATGTGGGTCCAG
GCACTGGATATCATCTTGGAGAAGATGAAGGCTTCGGGCTTCGACTTCTCTCAAGTCCTAGCCTTGTCCG
GGGCGGGCCAGCAACACGGAAGTATATACTGGAAGGCTGGAGCCCAGCAGGCACTGACAAGCTTATCACC
AGACCTCCGGCTACACCAGCAGCTGCAGGACTGTTTCTCCATCAGCGACTGCCCGGTGTGGATGGACTCC
AGCACCACAGCCCAGTGCCGCCAGCTGGAGGCTGCTGTGGGTGGTGCTCAGGCTCTCAGCTGCCTCACGG
GGTCCCGTGCCTATGAGCGTTTTACAGGGAACCAAATTGCAAAAATTTACCAGCAGAACCCCGAGGCCTA
CTCACATACGGAGAGAATTTCTTTGGTCAGTAGCTTTGCTGCTTCCCTGTTCCTTGGCTCTTACTCCCCT
ATTGACTACAGTGATGGTTCTGGAATGAATTTGTTGCAGATACAGGATAAAGTCTGGTCCCAGGCTTGCC
TTGGTGCCTGTGCACCTCATTTAGAGGAGAAGCTTAGCCCACCAGTACCATCATGCTCAGTTGTGGGAGC
CATTTCTTCCTACTACGTCCAGCGCTACGGATTTCCTCCAGGATGCAAAGTGGTGGCCTTCACTGGGGAC
AACCCAGCGTCGCTGGCAGGCATGAGACTGGAGGAAGGTGACATTGCGGTCAGCCTGGGCACCAGTGACA
CCCTGTTTCTCTGGCTCCAAGAGCCCATGCCTGCCCTGGAAGGCCACATCTTCTGCAACCCGGTTGACTC
CCAGCACTACATGGCACTCCTGTGCTTTAAAAATGGCTCCCTCATGAGAGAGAAGATCCGCAACGAGTCT
GTATCCCGTTCCTGGAGCGATTTCTCTAAGGCACTGCAGTCCACAGAGATGGGCAACGGTGGAAACCTGG
GTTTTTATTTTGATGTAATGGAGATCACCCCTGAAATTATTGGACGTCATAGGTTTAACACAGAAAACCA
CAAGGTTGCAGCATTCCCTGGGGATGTGGAGGTTCGAGCACTAATTGAAGGACAATTCATGGCCAAGAGG
ATTCACGCAGAAGGCCTGGGCTATCGAGTCATGTCCAAGACAAAGATTTTGGCCACAGGAGGAGCATCTC
ACAATAGAGAAATCTTACAGGTGCTTGCAGATGTGTTTGATGCCCCGGTGTATGTTATAGACACTGCCAA
CTCGGCCTGTGTGGGTTCTGCATACCGAGCTTTTCATGGTCTTGCAGGTGGAACAGATGTGCCCTTTTCA
GAGGTTGTGAAGTTAGCTCCAAATCCCAGACTAGCTGCTACCCCAAGCCCGGGAGCTTCTCAGGTCTACG
AGGCCCTTCTCCCCCAGTATGCCAAACTCGAGCAGAGAATCTTGTCTCAGACCCGGGGGCCTCCGGAGTG
A

Translation (536 aa):
MAEHAPRRCCLGWDFSTQQVKVVAVDAELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQ
ALDIILEKMKASGFDFSQVLALSGAGQQHGSIYWKAGAQQALTSLSPDLRLHQQLQDCFSISDCPVWMDS
STTAQCRQLEAAVGGAQALSCLTGSRAYERFTGNQIAKIYQQNPEAYSHTERISLVSSFAASLFLGSYSP
IDYSDGSGMNLLQIQDKVWSQACLGACAPHLEEKLSPPVPSCSVVGAISSYYVQRYGFPPGCKVVAFTGD
NPASLAGMRLEEGDIAVSLGTSDTLFLWLQEPMPALEGHIFCNPVDSQHYMALLCFKNGSLMREKIRNES
VSRSWSDFSKALQSTEMGNGGNLGFYFDVMEITPEIIGRHRFNTENHKVAAFPGDVEVRALIEGQFMAKR
IHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVIDTANSACVGSAYRAFHGLAGGTDVPFS
EVVKLAPNPRLAATPSPGASQVYEALLPQYAKLEQRILSQTRGPPE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH