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Report for CCDS3831.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3831.1 Public Homo sapiens 4 DCTD 24 110 108 CCDS HistoryNCBI Gene:1635Re-query CCDS DB by CCDS ID:3831.1Re-query CCDS DB by GeneID:1635See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3831.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000438320.7 ENSP00000398194.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000438320.7Link to Ensembl Protein Viewer:ENSP00000398194.2Re-query CCDS DB by Nucleotide ID:ENST00000438320Re-query CCDS DB by Protein ID:ENSP00000398194
Original member Current member EBI ENST00000510370.5 ENSP00000424017.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000510370.5Link to Ensembl Protein Viewer:ENSP00000424017.1Re-query CCDS DB by Nucleotide ID:ENST00000510370Re-query CCDS DB by Protein ID:ENSP00000424017
Original member Current member NCBI NM_001351743.2 NP_001338672.1 Accepted alive Link to Nucleotide Sequence:NM_001351743.2Link to Protein Sequence:NP_001338672.1Re-query CCDS DB by Nucleotide ID:NM_001351743Re-query CCDS DB by Protein ID:NP_001338672Link to BLAST:NP_001338672.1
Original member Current member NCBI NM_001351744.2 NP_001338673.1 Accepted alive Link to Nucleotide Sequence:NM_001351744.2Link to Protein Sequence:NP_001338673.1Re-query CCDS DB by Nucleotide ID:NM_001351744Re-query CCDS DB by Protein ID:NP_001338673Link to BLAST:NP_001338673.1
Original member Current member NCBI NM_001351745.2 NP_001338674.1 Accepted alive Link to Nucleotide Sequence:NM_001351745.2Link to Protein Sequence:NP_001338674.1Re-query CCDS DB by Nucleotide ID:NM_001351745Re-query CCDS DB by Protein ID:NP_001338674Link to BLAST:NP_001338674.1
Original member Current member NCBI NM_001351747.2 NP_001338676.1 Accepted alive Link to Nucleotide Sequence:NM_001351747.2Link to Protein Sequence:NP_001338676.1Re-query CCDS DB by Nucleotide ID:NM_001351747Re-query CCDS DB by Protein ID:NP_001338676Link to BLAST:NP_001338676.1
Original member Current member NCBI NM_001351748.2 NP_001338677.1 Accepted alive Link to Nucleotide Sequence:NM_001351748.2Link to Protein Sequence:NP_001338677.1Re-query CCDS DB by Nucleotide ID:NM_001351748Re-query CCDS DB by Protein ID:NP_001338677Link to BLAST:NP_001338677.1
Original member Current member NCBI NM_001351750.2 NP_001338679.1 Accepted alive Link to Nucleotide Sequence:NM_001351750.2Link to Protein Sequence:NP_001338679.1Re-query CCDS DB by Nucleotide ID:NM_001351750Re-query CCDS DB by Protein ID:NP_001338679Link to BLAST:NP_001338679.1
Original member Current member NCBI NM_001351753.2 NP_001338682.1 Accepted alive Link to Nucleotide Sequence:NM_001351753.2Link to Protein Sequence:NP_001338682.1Re-query CCDS DB by Nucleotide ID:NM_001351753Re-query CCDS DB by Protein ID:NP_001338682Link to BLAST:NP_001338682.1
Original member Current member NCBI NM_001921.3 NP_001912.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001921.3Link to Protein Sequence:NP_001912.2Re-query CCDS DB by Nucleotide ID:NM_001921Re-query CCDS DB by Protein ID:NP_001912Link to BLAST:NP_001912.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001338672.1 178 P32321-1 178 100% 0 0
NP_001338673.1 178 P32321-1 178 100% 0 0
NP_001338674.1 178 P32321-1 178 100% 0 0
NP_001338676.1 178 P32321-1 178 100% 0 0
NP_001338677.1 178 P32321-1 178 100% 0 0
NP_001338679.1 178 P32321-1 178 100% 0 0
NP_001338682.1 178 P32321-1 178 100% 0 0
NP_001912.2 178 P32321-1 178 100% 0 0

Chromosomal Locations for CCDS 3831.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 182891399 182891477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 182893031 182893127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 182894489 182894605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 182914923 182915058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 182915461 182915568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGAGTGAAGTTTCCTGCAAGAAACGGGACGACTATTTGGAATGGCCAGAGTATTTTATGGCTGTGGCCT
TCTTATCAGCACAGAGAAGCAAAGATCCAAATTCCCAGGTCGGCGCCTGCATCGTGAATTCAGAAAACAA
GATTGTCGGGATTGGGTACAATGGGATGCCAAATGGGTGCAGTGATGACGTGTTGCCTTGGAGAAGGACA
GCAGAGAATAAGCTGGACACCAAATACCCGTACGTGTGCCATGCGGAGCTGAATGCCATCATGAACAAAA
ATTCGACCGATGTGAAAGGCTGTAGTATGTATGTTGCCTTGTTCCCTTGTAATGAATGCGCTAAGCTCAT
CATCCAGGCAGGTATAAAAGAAGTGATTTTCATGTCTGATAAATACCATGATAGTGACGAGGCAACTGCT
GCGAGGCTCCTGTTTAATATGGCCGGGGTGACATTCCGGAAATTCATACCGAAGTGCAGCAAGATTGTCA
TTGACTTTGATTCAATTAACAGCAGACCGAGTCAAAAGCTTCAGTGA

Translation (178 aa):
MSEVSCKKRDDYLEWPEYFMAVAFLSAQRSKDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRT
AENKLDTKYPYVCHAELNAIMNKNSTDVKGCSMYVALFPCNECAKLIIQAGIKEVIFMSDKYHDSDEATA
ARLLFNMAGVTFRKFIPKCSKIVIDFDSINSRPSQKLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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