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Report for CCDS45253.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45253.1 Public Homo sapiens 15 PATL2 24 110 108 CCDS HistoryNCBI Gene:197135Re-query CCDS DB by CCDS ID:45253.1Re-query CCDS DB by GeneID:197135See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45253.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000434130.6 ENSP00000416673.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000434130.6Link to Ensembl Protein Viewer:ENSP00000416673.1Re-query CCDS DB by Nucleotide ID:ENST00000434130Re-query CCDS DB by Protein ID:ENSP00000416673
Original member Current member EBI ENST00000682850.1 ENSP00000508024.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682850.1Link to Ensembl Protein Viewer:ENSP00000508024.1Re-query CCDS DB by Nucleotide ID:ENST00000682850Re-query CCDS DB by Protein ID:ENSP00000508024
Original member Current member NCBI NM_001145112.2 NP_001138584.1 Accepted alive Link to Nucleotide Sequence:NM_001145112.2Link to Protein Sequence:NP_001138584.1Re-query CCDS DB by Nucleotide ID:NM_001145112Re-query CCDS DB by Protein ID:NP_001138584Link to BLAST:NP_001138584.1
Original member Current member NCBI NM_001387261.1 NP_001374190.1 Accepted alive Link to Nucleotide Sequence:NM_001387261.1Link to Protein Sequence:NP_001374190.1Re-query CCDS DB by Nucleotide ID:NM_001387261Re-query CCDS DB by Protein ID:NP_001374190Link to BLAST:NP_001374190.1
Original member Current member NCBI NM_001387262.1 NP_001374191.1 Accepted alive Link to Nucleotide Sequence:NM_001387262.1Link to Protein Sequence:NP_001374191.1Re-query CCDS DB by Nucleotide ID:NM_001387262Re-query CCDS DB by Protein ID:NP_001374191Link to BLAST:NP_001374191.1
Original member Current member NCBI NM_001387263.1 NP_001374192.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001387263.1Link to Protein Sequence:NP_001374192.1Re-query CCDS DB by Nucleotide ID:NM_001387263Re-query CCDS DB by Protein ID:NP_001374192Link to BLAST:NP_001374192.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138584.1 543 C9JE40 543 100% 0 0
NP_001374190.1 543 C9JE40 543 100% 0 0
NP_001374191.1 543 C9JE40 543 100% 0 0
NP_001374192.1 543 C9JE40 543 100% 0 0

Chromosomal Locations for CCDS 45253.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 44665953 44665971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44666392 44666541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44667106 44667203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44668342 44668482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44668980 44669139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44669280 44669413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44669510 44669563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44669777 44669874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44669967 44670087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44672015 44672156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44672388 44672456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44673235 44673377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44674150 44674230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44675486 44675691 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 44676475 44676490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1632 nt):
ATGAATTGCCTTGAAGGGCCAGGTAAGACCTGTGGCCCCTTGGCTTCTGAGGAGGAGCTGGTGTCTGCCT
GCCAGTTGGAAAAAGAAGAAGAGAATGAAGGGGAGGAGGAGGAAGAGGAGGAGGACGAGGAGGATCTGGA
CCCAGATCTGGACCCAGACCTAGAGGAGGAAGAGAATGATCTTGGGGATCCAGCTGTACTTGGTGCTGTC
CACAACACCCAGAGAGCTCTGCTTAGCTCCCCTGGAGTCAAGGCCCCTGGTATGCTGGGAATGTCACTTG
CCTCCTTGCATTTTCTGTGGCAGACCTTGGACTACCTGTCGCCCATCCCTTTCTGGCCTACATTTCCCAG
CACCAGCTCTCCAGCACAGCACTTTGGACCTCGGCTGCCCTCACCAGACCCAACTCTCTTCTGCAGCCTG
CTGACCTCGTGGCCCCCTAGGTTCAGTCATCTGACCCAGCTCCACCCTCGGCACCAACGAATCTTGCAGC
AGCAGCAGCATAGTCAAACACCAAGTCCCCCAGCCAAGAAGCCTTGGTCTCAGCAGCCAGACCCCTATGC
TAACCTCATGACCAGAAAAGAGAAGGACTGGGTGATAAAAGTGCAGATGGTGCAGCTGCAGAGTGCAAAA
CCCCGCCTGGATGACTACTATTACCAGGAATATTACCAGAAGCTAGAGAAGAAGCAGGCAGACGAAGAGC
TACTTGGACGAAGAAACCGGGTTGAGTCCCTCAAGCTGGTAACGCCTTACATTCCGAAGGCAGAGGCTTA
TGAGTCCGTGGTCCGAATCGAGGGTTCCCTGGGCCAGGTAGCTGTGTCGACATGCTTCAGCCCTCGCCGA
GCTATTGATGCGGTACCCCATGGAACTCAAGAGCAGGATATAGAAGCTGCAAGCAGTCAGAGGCTTCGGG
TATTATACCGGATTGAGAAGATGTTCCTTCAGTTACTAGAAATAGAGGAAGGCTGGAAGTATAGGCCTCC
ACCGCCCTGCTTTTCTGAGCAGCAAAGCAACCAGGTTGAGAAGCTCTTCCAGACCTTAAAGACCCAGGAG
CAGAACAACCTGGAAGAGGCAGCAGATGGCTTCCTGCAGGTGCTCTCTGTGAGGAAGGGGAAGGCCCTGG
TGGCCCGGCTGCTCCCCTTCCTGCCCCAGGATCAGGCTGTTACCATTCTTTTGGCTATCACCCACCATCT
GCCCCTCCTGGTCCGGAGGGATGTGGCTGATCAGGCCCTACAAATGTTATTCAAACCTCTGGGCAAATGT
ATTAGTCACTTGACCCTCCACGAACTCCTCCAAGGACTTCAGGGATTAACGCTGTTGCCACCTGGCTCCT
CAGAGCGGCCAGTCACCGTGGTGCTTCAGAATCAGTTTGGAATATCTTTGCTCTATGCCCTGCTGAGCCA
TGGGGAGCAACTGGTATCGCTGCATTCTTCCCTAGAGGAACCCAACAGTGACCATACAGCTTGGACAGAC
ATGGTGGTTCTGATTGCCTGGGAGATAGCCCAAATGCCTACAGCCTCTCTGGCAGAACCCCTAGCTTTCC
CCAGCAACCTACTTCCCCTGTTCTGTCACCACGTGGACAAACAATTGGTTCAGCAGCTGGAGGCCAGGAT
GGAGTTTGCCTGGATTTACTGA

Translation (543 aa):
MNCLEGPGKTCGPLASEEELVSACQLEKEEENEGEEEEEEEDEEDLDPDLDPDLEEEENDLGDPAVLGAV
HNTQRALLSSPGVKAPGMLGMSLASLHFLWQTLDYLSPIPFWPTFPSTSSPAQHFGPRLPSPDPTLFCSL
LTSWPPRFSHLTQLHPRHQRILQQQQHSQTPSPPAKKPWSQQPDPYANLMTRKEKDWVIKVQMVQLQSAK
PRLDDYYYQEYYQKLEKKQADEELLGRRNRVESLKLVTPYIPKAEAYESVVRIEGSLGQVAVSTCFSPRR
AIDAVPHGTQEQDIEAASSQRLRVLYRIEKMFLQLLEIEEGWKYRPPPPCFSEQQSNQVEKLFQTLKTQE
QNNLEEAADGFLQVLSVRKGKALVARLLPFLPQDQAVTILLAITHHLPLLVRRDVADQALQMLFKPLGKC
ISHLTLHELLQGLQGLTLLPPGSSERPVTVVLQNQFGISLLYALLSHGEQLVSLHSSLEEPNSDHTAWTD
MVVLIAWEIAQMPTASLAEPLAFPSNLLPLFCHHVDKQLVQQLEARMEFAWIY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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