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Report for CCDS42817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42817.1 Public Homo sapiens 2 ZNF142 24 110 108 CCDS HistoryNCBI Gene:7701Re-query CCDS DB by CCDS ID:42817.1Re-query CCDS DB by GeneID:7701See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42817.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000449707.5 ENSP00000408643.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000449707.5Link to Ensembl Protein Viewer:ENSP00000408643.1Re-query CCDS DB by Nucleotide ID:ENST00000449707Re-query CCDS DB by Protein ID:ENSP00000408643
Original member Current member NCBI NM_001105537.4 NP_001099007.1 Accepted alive Link to Nucleotide Sequence:NM_001105537.4Link to Protein Sequence:NP_001099007.1Re-query CCDS DB by Nucleotide ID:NM_001105537Re-query CCDS DB by Protein ID:NP_001099007Link to BLAST:NP_001099007.1
Original member Current member NCBI NM_001366291.2 NP_001353220.1 Accepted alive Link to Nucleotide Sequence:NM_001366291.2Link to Protein Sequence:NP_001353220.1Re-query CCDS DB by Nucleotide ID:NM_001366291Re-query CCDS DB by Protein ID:NP_001353220Link to BLAST:NP_001353220.1
Original member Current member NCBI NM_001379662.1 NP_001366591.1 Accepted alive Link to Nucleotide Sequence:NM_001379662.1Link to Protein Sequence:NP_001366591.1Re-query CCDS DB by Nucleotide ID:NM_001379662Re-query CCDS DB by Protein ID:NP_001366591Link to BLAST:NP_001366591.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001099007.1 1687 P52746 1687 100% 0 0
NP_001353220.1 1687 P52746 1687 100% 0 0
NP_001366591.1 1687 P52746 1687 100% 0 0

Chromosomal Locations for CCDS 42817.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 218638339 218638808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218640664 218640769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218642028 218645064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218646171 218646348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218648635 218649459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218650359 218650526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 218656150 218656429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (5064 nt):
ATGACAGACCCCCTTTTGGACTCACAGCCAGCCAGTAGCACCGGGGAGATGGATGGACTGTGCCCTGAGC
TATTGCTGATCCCCCCGCCTCTCTCTAACCGTGGAATCCTGGGGCCTGTCCAGAGCCCCTGTCCTTCCCG
GGACCCTGCACCTATACCTACTGAGCCAGGCTGCCTGCTGGTAGAGGCCACAGCAACTGAAGAGGGACCA
GGGAACATGGAGATCATTGTGGAGACAGTAGCTGGAACCCTGACCCCAGGTGCTCCTGGAGAGACCCCAG
CTCCCAAACTGCCTCCAGGAGAGAGAGAACCTTCACAGGAAGCAGGTACACCCTTGCCTGGGCAGGAGAC
AGCTGAAGAGGAGAATGTAGAGAAAGAAGAGAAGAGTGACACCCAGAAGGACTCCCAAAAGGCTGTGGAT
AAAGGCCAAGGGGCTCAGCGGCTGGAAGGGGATGTGGTCTCTGGCACCGAGTCCCTCTTCAAGACCCATA
TGTGTCCAGAGTGTAAGCGCTGCTTTAAGAAGCGGACTCATCTGGTGGAGCACCTGCATCTCCACTTCCC
AGACCCCAGCCTCCAGTGCCCTAACTGCCAGAAGTTCTTCACCAGTAAGAGCAAGCTCAAGACCCATCTG
CTGCGGGAGCTGGGTGAAAAGGCCCACCACTGCCCACTGTGCCACTACAGTGCGGTGGAGAGGAATGCAC
TCAACCGCCACATGGCCAGCATGCATGAAGATATTTCCAACTTCTACTCAGACACCTATGCCTGTCCTGT
CTGCCGTGAGGAATTCCGCCTCAGCCAGGCCCTAAAGGAGCACCTCAAGAGCCACACGGCAGCAGCCGCA
GCAGAGCCATTACCCCTTCGCTGCTTTCAGGAGGGCTGCAGCTATGCAGCACCCGACCGCAAGGCCTTCA
TTAAGCACCTGAAGGAGACCCATGGGGTGCGGGCTGTGGAGTGCCGCCATCACTCATGTCCCATGCTCTT
TGCCACAGCCGAAGCCATGGAGGCCCACCACAAGAGTCACTACGCCTTCCACTGCCCCCACTGTGATTTT
GCTTGTTCCAATAAGCACCTATTCCGTAAACACAAGAAGCAGGGCCACCCTGGCAGTGAAGAGCTGCGCT
GCACCTTCTGCCCCTTTGCCACCTTCAACCCAGTGGCTTACCAGGATCATGTAGGCAAGATGCATGCTCA
TGAAAAGATCCACCAGTGTCCTGAGTGCAACTTTGCCACTGCCCACAAGAGGGTGCTCATCCGACACATG
CTTCTACATACGGGTGAGAAGCCCCACAAGTGTGAGCTGTGTGACTTCACATGCCGAGACGTGAGCTACC
TATCCAAGCACATGCTGACCCACTCCAACACCAAGGATTACATGTGCACTGAATGTGGCTATGTCACCAA
GTGGAAGCACTACCTCCGTGTGCACATGCGAAAACATGCAGGGGACCTCAGGTATCAGTGCAACCAGTGC
TCCTATCGCTGTCACCGGGCTGATCAGCTGAGCAGCCACAAGCTGCGGCATCAGGGCAAGTCTCTGATGT
GTGAGGTGTGTGCCTTCGCCTGCAAGCGGAAGTATGAGCTGCAGAAGCACATGGCTTCCCAGCACCACCC
TGGCACACCGGCCCCACTCTACCCTTGCCACTACTGCAGTTACCAGAGCCGCCACAAGCAGGCTGTGCTG
AGCCATGAGAACTGCAAGCATACCCGCCTCCGTGAGTTCCACTGTGCCCTCTGTGACTACCGCACCTTCA
GCAACACCACACTCTTGTTCCATAAACGCAAGGCCCATGGCTATGTACCTGGAGACCAGGCCTGGCAGCT
CCGCTATGCAAGCCAGGAGCCAGAAGGGGCCATGCAGGGCCCAACACCCCCACCAGATTCAGAGCCCTCA
AACCAGCTGTCAGCCCGACCTGAGGGGCCAGGTCACGAACCTGGGACTGTGGTGGACCCCAGCTTGGACC
AGGCCCTGCCAGAGATGAGTGAGGAGGTCAACACTGGAAGACAGGAGGGCAGTGAGGCTCCCCATGGGGG
TGACCTGGGTGGCAGTCCCAGCCCAGCAGAGGTGGAGGAGGGCAGCTGCACACTACACCTAGAGGCCCTG
GGAGTAGAGCTGGAGTCTGTGACTGAGCCACCCCTTGAGGAGGTCACTGAAACAGCCCCTATGGAGTTCA
GGCCCCTGGGACTGGAAGGGCCAGATGGACTGGAAGGACCAGAGCTATCTAGCTTTGAAGGTATTGGGAC
TTCTGACTTGAGTGCTGAAGAAAATCCCCTTCTGGAAAAGCCAGTGTCTGAGCCCTCCACAAATCCTCCA
TCCTTAGAGGAGGCTCCTAACAACTGGGTAGGAACCTTCAAGACAACTCCACCTGCTGAGACAGCACCCT
TGCCCCCATTACCTGAGTCAGAGTCATTACTCAAGGCCCTAAGGAGACAGGACAAAGAACAAGCAGAGGC
ATTGGTGCTAGAGGGGCGGGTGCAGATGGTAGTGATCCAGGGAGAGGGGCGAGCCTTCCGCTGCCCACAC
TGCCCTTTTATCACTCGCCGGGAGAAGGCCCTGAATCTGCACTCCAGGACTGGGTGCCAAGGCCGCCGAG
AGCCCCTGCTGTGCCCCGAGTGTGGGGCTAGCTTCAAGCAACAACGCGGCCTCAGCACCCACCTGCTGAA
GAAGTGCCCTGTTCTACTCAGAAAGAACAAGGGCTTGCCCAGACCAGATTCACCCATCCCTCTGCAACCT
GTGCTCCCAGGTACCCAGGCCTCAGAGGACACAGAAAGTGGGAAGCCCCCACCTGCATCACAAGAAGCAG
AGCTACTGCTTCCAAAAGATGCTCCTTTGGAGCTTCCCAGGGAGCCAGAAGAAACAGAAGAGCCTCTTGC
CACAGTCTCTGGTTCCCCAGTCCCTCCTGCAGGAAACTCCTTGCCCACAGAGGCCCCTAAGAAGCACTGC
TTTGACCCAGTCCCTCCTGCAGGAAACTCCTCACCCACGGAGGCCCCTAAGAAGCACCACCTTGACCCAG
TCCCTCCTGCAGGAAACTCCTCACCCACAGAGGCCCTGAAGAAGCACCGCTTTGAGCAGGGCAAGTTTCA
CTGCAACTCCTGCCCATTCCTTTGTTCCCGGCTCTCCTCTATTACCTCTCACGTGGCTGAAGGCTGCAGG
GGGGGACGTGGCGGGGGAGGAAAACGAGGGACCCCCCAGACCCAGCCTGATGTGTCCCCGTTGAGCAATG
GGGACTCTGCTCCCCCGAAGAATGGGAGTACAGAGTCCAGCTCTGGTGATGGGGATACAGTTCTGGTTCA
AAAGCAGAAGGGGGCTCGCTTCTCCTGCCCTACATGTCCCTTTAGCTGCCAGCAGGAACGGGCTCTGAGG
ACTCACCAGATCCGGGGCTGCCCCCTCGAGGAGTCTGGAGAGCTGCACTGCAGCCTCTGCCCATTCACTG
CTCCTGCTGCCACTGCCTTAAGGCTCCACCAGAAGCGGAGGCACCCCACTGCAGCCCCAGCCCGTGGGCC
CCGGCCCCATCTACAGTGTGGGGACTGTGGCTTCACCTGTAAACAGAGCCGTTGCATGCAGCAGCACCGG
CGGCTCAAGCACGAGGGGGTGAAGCCCCATCAGTGCCCCTTCTGTGACTTTTCGACCACCAGACGGTACC
GGTTAGAGGCTCACCAGTCCCGACACACAGGCATTGGCCGCATCCCCTGCAGCTCTTGCCCCCAGACGTT
TGGTACCAACTCGAAACTGCGCTTGCACCGGTTAAGGGTACATGACAAAACACCTACCCACTTCTGTCCA
CTTTGTGACTATAGTGGCTACCTTCGCCATGACATCACTCGTCATGTCAACAGCTGCCACCAAGGCACCC
CAGCCTTTGCCTGCTCCCAGTGTGAAGCCCAGTTCAGCTCAGAGACAGCACTTAAGCAGCATGCTCTGCG
CCGACACCCCGAGCCTGCACAGCCTGCCCCTGGCTCTCCTGCAGAGACCACTGAGGGCCCCCTGCACTGT
TCCCGCTGTGGGTTGCTGTGCCCCAGCCCTGCCAGCTTACGAGGACACACCCGTAAACAGCACCCACGGC
TTGAGTGTGGGGCCTGCCAGGAGGCCTTCCCTAGCCGACTGGCTCTGGATGAGCACCGGAGGCAGCAGCA
TTTCAGCCACCGCTGTCAGCTCTGTGACTTTGCTGCCCGGGAGCGGGTGGGCCTGGTAAAGCACTACCTG
GAACAGCATGAGGAGACTTCAGCAGCCGTGGCAGCCTCAGATGGGGATGGGGATGCTGGCCAGCCCCCGC
TACACTGCCCCTTTTGTGACTTCACATGCCGCCATCAGCTGGTACTAGATCACCATGTGAAAGGGCATGG
GGGCACTCGTCTCTACAAGTGCACCGATTGTGCTTACAGCACCAAGAACCGACAGAAGATCACCTGGCAC
AGCCGCATCCACACTGGGGAAAAGCCTTACCACTGTCACCTCTGCCCCTATGCCTGTGCTGATCCCTCTC
GTCTCAAGTACCACATGCGGATCCACAAGGAGGAACGGAAGTACCTGTGCCCTGAGTGTGGCTACAAGTG
CAAGTGGGTCAACCAGCTGAAATACCACATGACCAAGCATACAGGACTGAAGCCATACCAGTGTCCCGAG
TGTGAGTACTGCACCAACCGGGCTGATGCACTGCGTGTGCACCAGGAGACCCGGCATCGAGAAGCACGGG
CTTTCATGTGTGAGCAGTGTGGCAAGGCCTTCAAGACGCGCTTCCTGCTGCGCACCCACCTTCGCAAGCA
CAGTGAGGCCAAACCCTATGTGTGCAATGTGTGCCACCGTGCTTTCCGCTGGGCTGCTGGCCTGCGCCAT
CATGCCCTCACCCACACCGACCGCCACCCCTTCTTTTGCCGCCTCTGCAACTACAAGGCCAAGCAAAAGT
TCCAGGTGGTCAAGCACGTACGCAGGCACCACCCTGACCAAGCCGACCCAAACCAGGGTGTGGGCAAAGA
CCCCACCACCCCCACAGTGCACCTGCATGATGTGCAGCTGGAGGATCCCAGCCCTCCTGCTCCTGCCGCT
CCCCACACTGGACCTGAGGGCTGA

Translation (1687 aa):
MTDPLLDSQPASSTGEMDGLCPELLLIPPPLSNRGILGPVQSPCPSRDPAPIPTEPGCLLVEATATEEGP
GNMEIIVETVAGTLTPGAPGETPAPKLPPGEREPSQEAGTPLPGQETAEEENVEKEEKSDTQKDSQKAVD
KGQGAQRLEGDVVSGTESLFKTHMCPECKRCFKKRTHLVEHLHLHFPDPSLQCPNCQKFFTSKSKLKTHL
LRELGEKAHHCPLCHYSAVERNALNRHMASMHEDISNFYSDTYACPVCREEFRLSQALKEHLKSHTAAAA
AEPLPLRCFQEGCSYAAPDRKAFIKHLKETHGVRAVECRHHSCPMLFATAEAMEAHHKSHYAFHCPHCDF
ACSNKHLFRKHKKQGHPGSEELRCTFCPFATFNPVAYQDHVGKMHAHEKIHQCPECNFATAHKRVLIRHM
LLHTGEKPHKCELCDFTCRDVSYLSKHMLTHSNTKDYMCTECGYVTKWKHYLRVHMRKHAGDLRYQCNQC
SYRCHRADQLSSHKLRHQGKSLMCEVCAFACKRKYELQKHMASQHHPGTPAPLYPCHYCSYQSRHKQAVL
SHENCKHTRLREFHCALCDYRTFSNTTLLFHKRKAHGYVPGDQAWQLRYASQEPEGAMQGPTPPPDSEPS
NQLSARPEGPGHEPGTVVDPSLDQALPEMSEEVNTGRQEGSEAPHGGDLGGSPSPAEVEEGSCTLHLEAL
GVELESVTEPPLEEVTETAPMEFRPLGLEGPDGLEGPELSSFEGIGTSDLSAEENPLLEKPVSEPSTNPP
SLEEAPNNWVGTFKTTPPAETAPLPPLPESESLLKALRRQDKEQAEALVLEGRVQMVVIQGEGRAFRCPH
CPFITRREKALNLHSRTGCQGRREPLLCPECGASFKQQRGLSTHLLKKCPVLLRKNKGLPRPDSPIPLQP
VLPGTQASEDTESGKPPPASQEAELLLPKDAPLELPREPEETEEPLATVSGSPVPPAGNSLPTEAPKKHC
FDPVPPAGNSSPTEAPKKHHLDPVPPAGNSSPTEALKKHRFEQGKFHCNSCPFLCSRLSSITSHVAEGCR
GGRGGGGKRGTPQTQPDVSPLSNGDSAPPKNGSTESSSGDGDTVLVQKQKGARFSCPTCPFSCQQERALR
THQIRGCPLEESGELHCSLCPFTAPAATALRLHQKRRHPTAAPARGPRPHLQCGDCGFTCKQSRCMQQHR
RLKHEGVKPHQCPFCDFSTTRRYRLEAHQSRHTGIGRIPCSSCPQTFGTNSKLRLHRLRVHDKTPTHFCP
LCDYSGYLRHDITRHVNSCHQGTPAFACSQCEAQFSSETALKQHALRRHPEPAQPAPGSPAETTEGPLHC
SRCGLLCPSPASLRGHTRKQHPRLECGACQEAFPSRLALDEHRRQQHFSHRCQLCDFAARERVGLVKHYL
EQHEETSAAVAASDGDGDAGQPPLHCPFCDFTCRHQLVLDHHVKGHGGTRLYKCTDCAYSTKNRQKITWH
SRIHTGEKPYHCHLCPYACADPSRLKYHMRIHKEERKYLCPECGYKCKWVNQLKYHMTKHTGLKPYQCPE
CEYCTNRADALRVHQETRHREARAFMCEQCGKAFKTRFLLRTHLRKHSEAKPYVCNVCHRAFRWAAGLRH
HALTHTDRHPFFCRLCNYKAKQKFQVVKHVRRHHPDQADPNQGVGKDPTTPTVHLHDVQLEDPSPPAPAA
PHTGPEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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