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Report for CCDS677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
677.1 Public Homo sapiens 1 ZZZ3 24 110 108 CCDS HistoryNCBI Gene:26009Re-query CCDS DB by CCDS ID:677.1Re-query CCDS DB by GeneID:26009See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 677.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370801.8 ENSP00000359837.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370801.8Link to Ensembl Protein Viewer:ENSP00000359837.3Re-query CCDS DB by Nucleotide ID:ENST00000370801Re-query CCDS DB by Protein ID:ENSP00000359837
Original member Current member NCBI NM_001376146.1 NP_001363075.1 Accepted alive Link to Nucleotide Sequence:NM_001376146.1Link to Protein Sequence:NP_001363075.1Re-query CCDS DB by Nucleotide ID:NM_001376146Re-query CCDS DB by Protein ID:NP_001363075Link to BLAST:NP_001363075.1
Original member Current member NCBI NM_001376147.1 NP_001363076.1 Accepted alive Link to Nucleotide Sequence:NM_001376147.1Link to Protein Sequence:NP_001363076.1Re-query CCDS DB by Nucleotide ID:NM_001376147Re-query CCDS DB by Protein ID:NP_001363076Link to BLAST:NP_001363076.1
Original member Current member NCBI NM_015534.6 NP_056349.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015534.6Link to Protein Sequence:NP_056349.1Re-query CCDS DB by Nucleotide ID:NM_015534Re-query CCDS DB by Protein ID:NP_056349Link to BLAST:NP_056349.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001363075.1 903 Q8IYH5-1 903 100% 0 0
NP_001363076.1 903 Q8IYH5-1 903 100% 0 0
NP_056349.1 903 Q8IYH5-1 903 100% 0 0

Chromosomal Locations for CCDS 677.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 77565640 77565784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77566081 77566181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77568332 77568466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77576068 77576220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77578774 77578869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77579527 77579628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77580998 77581069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77581776 77581891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77581979 77582126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77584517 77584655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 77631850 77633354 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2712 nt):
ATGGCTGCTTCCCGATCTACTCGTGTTACAAGATCAACAGTGGGGTTAAACGGCTTGGATGAATCTTTTT
GTGGTAGAACTTTAAGGAATCGTAGCATTGCGCATCCTGAAGAAATCTCTTCTAATTCTCAAGTACGATC
AAGATCACCAAAGAAGAGACCAGAGCCTGTGCCAATTCAGAAAGGAAATAATAATGGGAGAACCACTGAT
TTAAAACAGCAGAGTACCCGAGAATCATGGGTAAGCCCTAGGAAAAGAGGACTTTCTTCTTCAGAAAAGG
ATAACATAGAAAGGCAGGCTATAGAAAATTGTGAGAGAAGGCAAACAGAACCTGTTTCACCAGTTTTAAA
AAGAATTAAGCGTTGTCTTAGATCTGAAGCACCAAACAGTTCAGAAGAAGATTCTCCTATAAAATCAGAC
AAGGAGTCAGTAGAACAGAGGAGTACAGTAGTGGACAATGATGCAGATTTTCAAGGGACTAAACGAGCTT
GTCGATGTCTTATACTGGATGATTGTGAGAAAAGGGAAATTAAAAAGGTGAATGTCAGTGAGGAAGGGCC
ACTTAATTCTGCAGTAGTTGAAGAAATCACAGGCTATTTGGCTGTCAATGGTGTTGATGACAGTGATTCA
GCTGTTATAAACTGTGATGACTGTCAGCCTGATGGGAACACTAAACAAAATAGCATTGGTTCCTATGTGT
TACAGGAAAAATCAGTAGCTGAAAATGGGGATACGGATACCCAAACTTCAATGTTCCTTGATAGTAGGAA
GGAGGACAGTTATATAGACCATAAGGTGCCTTGCACAGATTCACAAGTGCAGGTCAAGTTGGAGGACCAC
AAAATAGTAACTGCCTGCTTGCCTGTGGAACATGTTAATCAGCTGACTACTGAGCCAGCTACAGGGCCCT
TTTCTGAAACTCAGTCATCTTTAAGGGATTCTGAGGAGGAAGTAGATGTGGTGGGAGATAGCAGTGCCTC
AAAAGAGCAGTGTAAAGAAAACACCAATAACGAACTGGACACAAGTCTTGAGAGTATGCCAGCCTCCGGA
GAACCTGAACCATCTCCTGTTCTAGACTGTGTTTCAGCTCAAATGATGTCTTTATCAGAACCTCAAGAAC
ATCGTTATACTCTGAGAACCTCACCACGAAGGGCAGCCCCTACCAGAGGTAGTCCCACTAAAAACAGTTC
TCCTTACAGAGAAAATGGACAATTTGAGGAGAATAATCTTAGTCCTAATGAAACAAATGCAACTGTTAGT
GATAATGTAAGTCAATCTCCTACAAATCCTGGTGAAATTTCTCAAAATGAAAAAGGGATATGTTGTGACT
CTCAAAATAATGGAAGTGAAGGAGTAAGTAAACCACCCTCAGAGGCAAGACTCAATATTGGACATTTGCC
ATCTGCCAAAGAGAGTGCCAGTCAGCACATTACAGAAGAGGAAGATGATGATCCTGATGTTTATTACTTT
GAATCAGATCATGTGGCACTGAAACACAACAAAGATTATCAGAGACTATTACAGACGATTGCTGTACTCG
AGGCTCAGCGTTCTCAAGCAGTCCAAGACCTTGAAAGTTTAGGCAGGCACCAGAGAGAAGCACTGAAAAA
TCCCATTGGATTTGTGGAAAAACTCCAGAAGAAGGCTGATATTGGGCTTCCATATCCACAGAGAGTTGTT
CAATTGCCTGAGATCGTATGGGACCAATATACCCATAGCCTTGGGAATTTTGAAAGAGAATTTAAAAATC
GTAAAAGACATACTAGAAGAGTTAAGCTAGTTTTTGATAAAGTAGGTTTACCTGCTAGACCAAAAAGTCC
TTTAGATCCTAAGAAGGATGGAGAGTCCCTTTCATATTCTATGTTGCCTTTGAGTGATGGTCCAGAAGGC
TCAAGCAGTCGTCCTCAGATGATAAGAGGACGCTTGTGTGATGATACCAAACCTGAAACATTTAACCAGT
TGTGGACTGTTGAAGAACAGAAAAAGCTGGAACAGCTACTCATCAAATACCCTCCTGAAGAAGTAGAATC
TCGACGCTGGCAGAAGATAGCAGATGAATTGGGCAACAGGACAGCAAAACAGGTTGCCAGCCGAGTACAG
AAGTATTTCATAAAGCTAACTAAAGCTGGCATTCCAGTACCAGGCAGAACACCAAACTTATATATATACT
CCAAAAAGTCTTCAACAAGCAGACGACAGCACCCTCTTAATAAGCATCTCTTTAAGCCTTCCACTTTCAT
GACTTCACATGAACCGCCAGTGTATATGGATGAAGATGATGACCGATCTTGTTTTCATAGCCACATGAAC
ACTGCTGTTGAAGATGCATCAGATGACGAAAGTATTCCTATCATGTATAGGAATTTACCTGAATATAAAG
AACTATTACAGTTTAAAAAGTTAAAGAAGCAGAAACTTCAGCAAATGCAAGCTGAAAGTGGATTTGTGCA
ACATGTGGGCTTTAAGTGTGATAACTGTGGCATAGAACCCATCCAGGGTGTTCGGTGGCATTGCCAGGAT
TGTCCTCCAGAAATGTCTTTGGATTTCTGTGATTCTTGTTCAGACTGTCTACATGAAACAGATATTCACA
AGGAAGATCACCAATTAGAACCTATTTATAGGTCAGAGACATTCTTAGACAGAGACTACTGTGTGTCTCA
GGGCACCAGTTACAATTACCTTGACCCAAACTACTTTCCAGCAAACAGATGA

Translation (903 aa):
MAASRSTRVTRSTVGLNGLDESFCGRTLRNRSIAHPEEISSNSQVRSRSPKKRPEPVPIQKGNNNGRTTD
LKQQSTRESWVSPRKRGLSSSEKDNIERQAIENCERRQTEPVSPVLKRIKRCLRSEAPNSSEEDSPIKSD
KESVEQRSTVVDNDADFQGTKRACRCLILDDCEKREIKKVNVSEEGPLNSAVVEEITGYLAVNGVDDSDS
AVINCDDCQPDGNTKQNSIGSYVLQEKSVAENGDTDTQTSMFLDSRKEDSYIDHKVPCTDSQVQVKLEDH
KIVTACLPVEHVNQLTTEPATGPFSETQSSLRDSEEEVDVVGDSSASKEQCKENTNNELDTSLESMPASG
EPEPSPVLDCVSAQMMSLSEPQEHRYTLRTSPRRAAPTRGSPTKNSSPYRENGQFEENNLSPNETNATVS
DNVSQSPTNPGEISQNEKGICCDSQNNGSEGVSKPPSEARLNIGHLPSAKESASQHITEEEDDDPDVYYF
ESDHVALKHNKDYQRLLQTIAVLEAQRSQAVQDLESLGRHQREALKNPIGFVEKLQKKADIGLPYPQRVV
QLPEIVWDQYTHSLGNFEREFKNRKRHTRRVKLVFDKVGLPARPKSPLDPKKDGESLSYSMLPLSDGPEG
SSSRPQMIRGRLCDDTKPETFNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASRVQ
KYFIKLTKAGIPVPGRTPNLYIYSKKSSTSRRQHPLNKHLFKPSTFMTSHEPPVYMDEDDDRSCFHSHMN
TAVEDASDDESIPIMYRNLPEYKELLQFKKLKKQKLQQMQAESGFVQHVGFKCDNCGIEPIQGVRWHCQD
CPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSETFLDRDYCVSQGTSYNYLDPNYFPANR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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