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Report for CCDS9820.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
9820.1 |
Public |
Homo sapiens |
14 |
PTGR2 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:145482](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:9820.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:145482](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 14 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 9820.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000267568.8 |
ENSP00000267568.4 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000267568.8](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000267568.4](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000267568](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000267568](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000555228.5 |
ENSP00000450975.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000555228.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000450975.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000555228](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000450975](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000555661.6 |
ENSP00000452280.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000555661.6](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000452280.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000555661](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000452280](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001146154.2 |
NP_001139626.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001146154.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001139626.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001146154](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001139626](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001139626.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001146155.3 |
NP_001139627.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001146155.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001139627.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001146155](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001139627](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001139627.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001371325.1 |
NP_001358254.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001371325.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001358254.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001371325](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001358254](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001358254.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_152444.4 |
NP_689657.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_152444.4](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_689657.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_152444](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_689657](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_689657.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 9820.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1056 nt): ATGATTGTTCAAAGAGTGGTATTGAATTCTCGACCTGGAAAAAATGGTAATCCAGTGGCAGAGAATTTCC GAATGGAAGAAGTCTATTTACCAGATAATATTAATGAAGGACAAGTACAAGTTAGAACTCTTTATCTTTC TGTGGATCCTTACATGCGTTGTAGAATGAATGAAGACACTGGCACTGATTATATAACACCTTGGCAGCTA TCTCAAGTCGTTGATGGAGGAGGTATTGGAATTATAGAAGAAAGCAAACACACAAATTTGACTAAAGGCG ATTTTGTGACTTCTTTCTATTGGCCCTGGCAAACCAAGGTTATTCTGGATGGAAATAGCCTTGAAAAGGT AGACCCACAACTTGTGGATGGACACCTTTCATATTTTCTTGGAGCTATAGGTATGCCTGGTTTGACTTCC TTGATTGGGATACAGGAAAAAGGTCATATAACTGCTGGATCTAATAAGACAATGGTTGTCAGTGGGGCCG CAGGTGCCTGTGGATCTGTGGCTGGGCAGATTGGCCATTTCTTAGGTTGTTCCAGAGTGGTGGGAATTTG TGGAACACATGAGAAATGCATCCTCTTGACCTCAGAACTGGGCTTTGATGCTGCAATTAATTATAAAAAA GACAATGTGGCAGAACAGCTCCGTGAATCATGCCCAGCTGGAGTGGATGTTTATTTTGACAATGTTGGTG GTAACATCAGTGATACAGTGATAAGTCAGATGAATGAGAACAGCCACATCATCCTGTGTGGTCAAATTTC TCAGTACAACAAAGATGTGCCTTATCCTCCCCCGCTATCCCCTGCTATAGAGGCAATCCAGAAAGAAAGA AACATCACAAGGGAAAGATTTCTGGTATTAAATTATAAAGACAAATTTGAGCCTGGCATTCTACAGCTGA GTCAGTGGTTTAAAGAAGGAAAGCTAAAGATTAAAGAGACGGTAATAAATGGGTTGGAAAACATGGGAGC TGCATTCCAGTCCATGATGACAGGAGGTAACATTGGAAAGCAGATAGTTTGCATTTCAGAAGAAATCTCT TTGTAA
Translation (351 aa): MIVQRVVLNSRPGKNGNPVAENFRMEEVYLPDNINEGQVQVRTLYLSVDPYMRCRMNEDTGTDYITPWQL SQVVDGGGIGIIEESKHTNLTKGDFVTSFYWPWQTKVILDGNSLEKVDPQLVDGHLSYFLGAIGMPGLTS LIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKK DNVAEQLRESCPAGVDVYFDNVGGNISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKER NITRERFLVLNYKDKFEPGILQLSQWFKEGKLKIKETVINGLENMGAAFQSMMTGGNIGKQIVCISEEIS L
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