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Report for CCDS7052.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7052.2 Public Homo sapiens 10 ZMYND11 24 110 108 CCDS HistoryNCBI Gene:10771Re-query CCDS DB by CCDS ID:7052.2Re-query CCDS DB by GeneID:10771See the combined annotation on chromosome 10 in Sequence Viewer

Public Note for CCDS 7052.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and conservation data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 7052.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381591.5 ENSP00000371003.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381591.5Link to Ensembl Protein Viewer:ENSP00000371003.1Re-query CCDS DB by Nucleotide ID:ENST00000381591Re-query CCDS DB by Protein ID:ENSP00000371003
Original member Current member EBI ENST00000381604.9 ENSP00000371017.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000381604.9Link to Ensembl Protein Viewer:ENSP00000371017.6Re-query CCDS DB by Nucleotide ID:ENST00000381604Re-query CCDS DB by Protein ID:ENSP00000371017
Original member Current member EBI ENST00000397962.8 ENSP00000381053.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397962.8Link to Ensembl Protein Viewer:ENSP00000381053.3Re-query CCDS DB by Nucleotide ID:ENST00000397962Re-query CCDS DB by Protein ID:ENSP00000381053
Original member Current member EBI ENST00000704301.1 ENSP00000515825.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000704301.1Link to Ensembl Protein Viewer:ENSP00000515825.1Re-query CCDS DB by Nucleotide ID:ENST00000704301Re-query CCDS DB by Protein ID:ENSP00000515825
Original member Current member NCBI NM_001370097.3 NP_001357026.1 Accepted alive Link to Nucleotide Sequence:NM_001370097.3Link to Protein Sequence:NP_001357026.1Re-query CCDS DB by Nucleotide ID:NM_001370097Re-query CCDS DB by Protein ID:NP_001357026Link to BLAST:NP_001357026.1
Original member Current member NCBI NM_001370098.2 NP_001357027.1 Accepted alive Link to Nucleotide Sequence:NM_001370098.2Link to Protein Sequence:NP_001357027.1Re-query CCDS DB by Nucleotide ID:NM_001370098Re-query CCDS DB by Protein ID:NP_001357027Link to BLAST:NP_001357027.1
Original member Current member NCBI NM_001370099.2 NP_001357028.1 Accepted alive Link to Nucleotide Sequence:NM_001370099.2Link to Protein Sequence:NP_001357028.1Re-query CCDS DB by Nucleotide ID:NM_001370099Re-query CCDS DB by Protein ID:NP_001357028Link to BLAST:NP_001357028.1
Original member Current member NCBI NM_001370100.5 NP_001357029.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001370100.5Link to Protein Sequence:NP_001357029.1Re-query CCDS DB by Nucleotide ID:NM_001370100Re-query CCDS DB by Protein ID:NP_001357029Link to BLAST:NP_001357029.1
Original member Current member NCBI NM_001370101.2 NP_001357030.1 Accepted alive Link to Nucleotide Sequence:NM_001370101.2Link to Protein Sequence:NP_001357030.1Re-query CCDS DB by Nucleotide ID:NM_001370101Re-query CCDS DB by Protein ID:NP_001357030Link to BLAST:NP_001357030.1
Original member Current member NCBI NM_001370102.2 NP_001357031.1 Accepted alive Link to Nucleotide Sequence:NM_001370102.2Link to Protein Sequence:NP_001357031.1Re-query CCDS DB by Nucleotide ID:NM_001370102Re-query CCDS DB by Protein ID:NP_001357031Link to BLAST:NP_001357031.1
Original member Current member NCBI NM_006624.7 NP_006615.2 Accepted alive Link to Nucleotide Sequence:NM_006624.7Link to Protein Sequence:NP_006615.2Re-query CCDS DB by Nucleotide ID:NM_006624Re-query CCDS DB by Protein ID:NP_006615Link to BLAST:NP_006615.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001357026.1 602 Q15326-1 602 100% 0 0
NP_001357027.1 602 Q15326-1 602 100% 0 0
NP_001357028.1 602 Q15326-1 602 100% 0 0
NP_001357029.1 602 Q15326-1 602 100% 0 0
NP_001357030.1 602 Q15326-1 602 100% 0 0
NP_001357031.1 602 Q15326-1 602 100% 0 0
NP_006615.2 602 Q15326-1 602 100% 0 0

Chromosomal Locations for CCDS 7052.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 180013 180128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 209889 210048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 221195 221356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 236838 236915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 237585 237677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 239438 239525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 240056 240111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 240893 240970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 242021 242139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 246766 246973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 247398 247466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 248336 248608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 248903 249088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 252348 252470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGGCACGTTTAACAAAAAGACGACAGGCGGATACAAAAGCTATCCAGCATCTTTGGGCAGCCATTGAGA
TTATACGGAACCAGAAGCAGATTGCCAACATTGACCGTATTACAAAGTATATGTCTCGAGTCCACGGTAT
GCACCCTAAAGAGACCACCCGTCAGCTGAGCTTAGCTGTGAAAGATGGTCTTATTGTCGAAACTCTAACA
GTGGGCTGCAAAGGTTCAAAAGCTGGTATTGAACAAGAAGGATATTGGTTGCCAGGAGATGAGATTGACT
GGGAAACAGAAAATCATGACTGGTATTGTTTTGAATGCCATTTGCCTGGAGAGGTGTTGATATGTGACCT
GTGTTTTCGTGTGTATCATTCCAAGTGTTTGTCTGATGAGTTCAGGCTTAGAGACAGCAGTAGTCCCTGG
CAGTGCCCAGTTTGCAGGAGCATTAAGAAGAAGAATACAAACAAACAGGAGATGGGCACATACCTCAGAT
TCATTGTCTCCCGCATGAAGGAGAGGGCTATAGATCTTAATAAAAAGGGGAAGGACAATAAACACCCGAT
GTACAGGAGGCTGGTGCACTCAGCTGTGGACGTTCCCACCATTCAAGAGAAAGTGAATGAAGGGAAATAC
CGAAGTTATGAAGAGTTCAAAGCTGATGCCCAATTGCTTCTCCACAATACCGTGATTTTCTATGGAGCAG
ACAGTGAGCAAGCTGACATTGCGAGGATGCTATATAAAGACACATGTCATGAGCTGGATGAACTGCAGCT
TTGCAAGAATTGCTTTTACTTGTCAAATGCTCGTCCTGACAACTGGTTCTGTTATCCTTGTATACCTAAT
CATGAGCTGGTTTGGGCTAAAATGAAAGGTTTTGGGTTTTGGCCAGCCAAAGTCATGCAGAAAGAAGACA
ATCAAGTCGACGTTCGCTTCTTTGGCCACCACCACCAGAGGGCCTGGATTCCTTCTGAAAACATTCAAGA
TATCACAGTCAACATTCATCGGCTGCACGTGAAGCGCAGTATGGGTTGGAAAAAGGCCTGTGATGAGCTG
GAGCTGCATCAGCGTTTCCTACGAGAAGGGAGATTTTGGAAATCTAAGAATGAGGACCGAGGTGAGGAAG
AGGCAGAATCCAGTATCTCCTCCACCAGTAATGAGCAGCTAAAGGTCACTCAAGAACCAAGAGCAAAGAA
AGGACGACGTAATCAAAGTGTGGAGCCCAAAAAGGAAGAACCAGAGCCTGAAACAGAAGCAGTAAGTTCT
AGCCAGGAAATACCCACGATGCCTCAGCCCATCGAAAAAGTCTCCGTGTCAACTCAGACAAAGAAGTTAA
GTGCCTCTTCACCAAGAATGCTGCATCGGAGCACCCAGACCACAAACGACGGCGTGTGTCAGAGCATGTG
CCATGACAAATACACCAAGATCTTCAATGACTTCAAAGACCGGATGAAGTCGGACCACAAGCGGGAGACA
GAGCGTGTTGTCCGAGAAGCTCTGGAGAAGCTGCGTTCTGAAATGGAAGAAGAAAAGAGACAAGCTGTAA
ATAAAGCTGTAGCCAACATGCAGGGTGAGATGGACAGAAAATGTAAGCAAGTAAAGGAAAAGTGTAAGGA
AGAATTTGTAGAAGAAATCAAGAAGCTGGCAACACAGCACAAGCAACTGATTTCTCAGACCAAGAAGAAG
CAGTGGTGCTACAACTGTGAGGAGGAGGCCATGTACCACTGCTGCTGGAACACATCCTACTGCTCCATCA
AGTGCCAGCAGGAGCACTGGCACGCGGAGCACAAGCGCACCTGCCGCCGGAAAAGATGA

Translation (602 aa):
MARLTKRRQADTKAIQHLWAAIEIIRNQKQIANIDRITKYMSRVHGMHPKETTRQLSLAVKDGLIVETLT
VGCKGSKAGIEQEGYWLPGDEIDWETENHDWYCFECHLPGEVLICDLCFRVYHSKCLSDEFRLRDSSSPW
QCPVCRSIKKKNTNKQEMGTYLRFIVSRMKERAIDLNKKGKDNKHPMYRRLVHSAVDVPTIQEKVNEGKY
RSYEEFKADAQLLLHNTVIFYGADSEQADIARMLYKDTCHELDELQLCKNCFYLSNARPDNWFCYPCIPN
HELVWAKMKGFGFWPAKVMQKEDNQVDVRFFGHHHQRAWIPSENIQDITVNIHRLHVKRSMGWKKACDEL
ELHQRFLREGRFWKSKNEDRGEEEAESSISSTSNEQLKVTQEPRAKKGRRNQSVEPKKEEPEPETEAVSS
SQEIPTMPQPIEKVSVSTQTKKLSASSPRMLHRSTQTTNDGVCQSMCHDKYTKIFNDFKDRMKSDHKRET
ERVVREALEKLRSEMEEEKRQAVNKAVANMQGEMDRKCKQVKEKCKEEFVEEIKKLATQHKQLISQTKKK
QWCYNCEEEAMYHCCWNTSYCSIKCQQEHWHAEHKRTCRRKR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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