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Report for CCDS94714.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
94714.1 Public Homo sapiens Y NLGN4Y 24 110 108 CCDS HistoryNCBI Gene:22829Re-query CCDS DB by CCDS ID:94714.1Re-query CCDS DB by GeneID:22829See the combined annotation on chromosome Y in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 94714.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000643089.1 ENSP00000496594.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000643089.1Link to Ensembl Protein Viewer:ENSP00000496594.1Re-query CCDS DB by Nucleotide ID:ENST00000643089Re-query CCDS DB by Protein ID:ENSP00000496594
Original member Current member EBI ENST00000684976.1 ENSP00000510011.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000684976.1Link to Ensembl Protein Viewer:ENSP00000510011.1Re-query CCDS DB by Nucleotide ID:ENST00000684976Re-query CCDS DB by Protein ID:ENSP00000510011
Original member Current member NCBI NM_001365584.1 NP_001352513.1 Accepted alive Link to Nucleotide Sequence:NM_001365584.1Link to Protein Sequence:NP_001352513.1Re-query CCDS DB by Nucleotide ID:NM_001365584Re-query CCDS DB by Protein ID:NP_001352513Link to BLAST:NP_001352513.1
Original member Current member NCBI NM_001365586.1 NP_001352515.1 Accepted alive Link to Nucleotide Sequence:NM_001365586.1Link to Protein Sequence:NP_001352515.1Re-query CCDS DB by Nucleotide ID:NM_001365586Re-query CCDS DB by Protein ID:NP_001352515Link to BLAST:NP_001352515.1
Original member Current member NCBI NM_001365588.1 NP_001352517.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001365588.1Link to Protein Sequence:NP_001352517.1Re-query CCDS DB by Nucleotide ID:NM_001365588Re-query CCDS DB by Protein ID:NP_001352517Link to BLAST:NP_001352517.1
Original member Current member NCBI NM_001394830.1 NP_001381759.1 Accepted alive Link to Nucleotide Sequence:NM_001394830.1Link to Protein Sequence:NP_001381759.1Re-query CCDS DB by Nucleotide ID:NM_001394830Re-query CCDS DB by Protein ID:NP_001381759Link to BLAST:NP_001381759.1

Chromosomal Locations for CCDS 94714.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome Y (NC_000024.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome YSee the combined annotation on chromosome Y in Sequence Viewer

Chromosome Start Stop Links
Y 14622120 14622591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 14719459 14719518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 14723117 14723269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 14824188 14824373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 14829730 14830519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y
Y 14840413 14841262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome YLink to Ensembl Genome Browser on chromosome Y

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2511 nt):
ATGTTGCGTCCCCAGGGACTGCTATGGCTCCCTTTGTTGTTCACCTCTGTCTGTGTCATGTTAAACTCCA
ATGTTCTTCTGTGGATAACTGCTCTTGCCATCAAGTTCACCCTCATTGACAGCCAAGCACAGTATCCAGT
TGTCAACACAAATTATGGTAAAATCCAGGGCCTAAGAACACCATTACCCAGTGAGATCTTGGGTCCAGTG
GAGCAGTACTTAGGGGTCCCCTATGCCTCACCCCCAACTGGAGAGAGGCGGTTTCAGCCACCAGAATCCC
CATCCTCCTGGACTGGCATCCGAAATGCTACTCAGTTTTCTGCTGTGTGCCCCCAGCACCTGGATGAAAG
ATTCTTATTGCATGACATGCTGCCCATCTGGTTTACCACCAGTTTGGATACTTTGATGACCTATGTTCAA
GATCAAAATGAAGACTGCCTTTACTTAAACATCTATGTGCCCATGGAAGATGGAACCAACATAAAGAGAA
ATGCAGACGATATAACCAGTAATGACCATGGTGAAGATAAAGATATTCATGAACAGAACAGTAAGAAGCC
TGTTATGGTCTATATCCATGGGGGATCTTACATGGAGGGAACCGGTAACATGATTGATGGCAGCATTTTG
GCCAGCTATGGGAACGTCATCGTTATCACCATTAACTACCGTCTGGGAATACTAGGGTTTTTAAGTACCG
GTGACCAGGCAGCAAAAGGCAACTATGGGCTCCTGGATCAGATTCAAGCACTGAGGTGGATTGAGGAGAA
TGTCGGAGCCTTTGGCGGGGACCCCAAGAGAGTGACTATCTTTGGCTCGGGGGCTGGGGCCTCCTGTGTC
AGCCTGTTGACCCTGTCCCACTACTCAGAAGGTCTCTTCCAGAAGGCCATCATTCAGAGCGGCACTGCCC
TGTCCAGCTGGGCAGTGAACTACCAGCCGGCCAAGTACACTCGGATATTGGCAGACAAGGTCGGCTGCAA
CATGCTGGACACCACGGACATGGTAGAATGTCTGAAGAACAAGAACTACAAGGAGCTCATCCAGCAGACC
ATCACCCCGGCCACCTACCACATAGCCTTTGGGCCGGTGATCGACGGCGACGTCATCCCAGACGACCCCC
AGATCCTGATGGAGCAAGGCGAGTTCCTCAACTACGACATCATGCTGGGCGTCAACCAAGGGGAAGGCCT
GAAGTTCGTGGACGGCATCGTGGATAACGAGGACGGTGTGACGCCCAACGACTTTGACTTCTCCGTGTCC
AACTTCGTGGACAACCTTTACGGCTACCCTGAAGGGAAAGACACTTTGCGGGAGACTATCAAGTTCATGT
ACACAGACTGGGCCGATAAGGAAAACCCGGAGACGCGGCGGAAAACCCTGGTGGCTCTCTTTACTGACCA
TCAGTGGGTGGCCCCCGCCGTGGCCACCGCCGACCTGCACGCGCAGTACGGCTCCCCCACCTACTTCTAT
GCCTTCTATCATCACTGCCAAAGCGAAATGAAGCCCAGCTGGGCAGATTCGGCCCATGGCGATGAAGTCC
CCTATGTCTTCGGCATCCCCATGATCGGTCCCACAGAGCTCTTCAGTTGTAATTTCTCCAAGAACGACGT
CATGCTCAGTGCCGTGGTGATGACCTACTGGACGAACTTCGCCAAAACTGGTGATCCAAACCAACCAGTT
CCTCAGGATACCAAGTTCATTCATACAAAACCCAATCGCTTTGAAGAAGTGGCCTGGTCCAAGTATAATC
CCAAAGACCAGCTCTATCTGCATATTGGCTTGAAACCCAGAGTGAGAGATCACTACCGGGCAACGAAAGT
GGCTTTCTGGTTGGAATTGGTTCCTCATTTGCACAACTTGAACGAGATATTCCAGTATGTTTCAACAACC
ACAAAGGTTCCTCCACCAGACATGACATCATTTCCCTATGGCACCCGGCGATCTCCCGCCAAGATATGGC
CAACCACCAAACGCCCAGCAATCACTCCTGCCAACAATCCCAAACACTCTAAGGACCCTCACAAAACAGG
GCCCGAGGACACAACTGTCCTCATTGAAACCAAACGAGATTATTCCACCGAATTAAGTGTCACCATTGCC
GTCGGGGCGTCGCTCCTCTTCCTCAACATCTTAGCCTTTGCGGCGCTGTACTACAAAAAGGACAAGAGGC
GCCATGAGACTCACAGGCACCCCAGTCCCCAGAGAAACACCACAAATGATATCACTCACATCCAGAACGA
AGAGATCATGTCTCTGCAGATGAAGCAGCTGGAACACGATCACGAGTGTGAGTCGCTGCAGGCACACGAC
ACGCTGAGGCTCACCTGCCCTCCAGACTACACCCTCACGCTGCGCCGGTCGCCGGATGACATCCCATTTA
TGACGCCAAACACCATCACCATGATTCCAAACACATTGATGGGGATGCAGCCTTTACACACTTTTAAAAC
CTTCAGTGGAGGACAAAACAGTACAAATTTACCCCACGGACATTCCACCACTAGAGTATAG

Translation (836 aa):
MLRPQGLLWLPLLFTSVCVMLNSNVLLWITALAIKFTLIDSQAQYPVVNTNYGKIQGLRTPLPSEILGPV
EQYLGVPYASPPTGERRFQPPESPSSWTGIRNATQFSAVCPQHLDERFLLHDMLPIWFTTSLDTLMTYVQ
DQNEDCLYLNIYVPMEDGTNIKRNADDITSNDHGEDKDIHEQNSKKPVMVYIHGGSYMEGTGNMIDGSIL
ASYGNVIVITINYRLGILGFLSTGDQAAKGNYGLLDQIQALRWIEENVGAFGGDPKRVTIFGSGAGASCV
SLLTLSHYSEGLFQKAIIQSGTALSSWAVNYQPAKYTRILADKVGCNMLDTTDMVECLKNKNYKELIQQT
ITPATYHIAFGPVIDGDVIPDDPQILMEQGEFLNYDIMLGVNQGEGLKFVDGIVDNEDGVTPNDFDFSVS
NFVDNLYGYPEGKDTLRETIKFMYTDWADKENPETRRKTLVALFTDHQWVAPAVATADLHAQYGSPTYFY
AFYHHCQSEMKPSWADSAHGDEVPYVFGIPMIGPTELFSCNFSKNDVMLSAVVMTYWTNFAKTGDPNQPV
PQDTKFIHTKPNRFEEVAWSKYNPKDQLYLHIGLKPRVRDHYRATKVAFWLELVPHLHNLNEIFQYVSTT
TKVPPPDMTSFPYGTRRSPAKIWPTTKRPAITPANNPKHSKDPHKTGPEDTTVLIETKRDYSTELSVTIA
VGASLLFLNILAFAALYYKKDKRRHETHRHPSPQRNTTNDITHIQNEEIMSLQMKQLEHDHECESLQAHD
TLRLTCPPDYTLTLRRSPDDIPFMTPNTITMIPNTLMGMQPLHTFKTFSGGQNSTNLPHGHSTTRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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