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Report for CCDS25303.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25303.1 Public Mus musculus 11 Cbx1 23 108 98 CCDS HistoryNCBI Gene:12412Re-query CCDS DB by CCDS ID:25303.1Re-query CCDS DB by GeneID:12412See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25303.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000093943.9 ENSMUSP00000091475.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000093943.9Link to Ensembl Protein Viewer:ENSMUSP00000091475.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000093943Re-query CCDS DB by Protein ID:ENSMUSP00000091475
Original member Current member NCBI NM_001362560.1 NP_001349489.1 Accepted alive Link to Nucleotide Sequence:NM_001362560.1Link to Protein Sequence:NP_001349489.1Re-query CCDS DB by Nucleotide ID:NM_001362560Re-query CCDS DB by Protein ID:NP_001349489Link to BLAST:NP_001349489.1
Original member Current member NCBI NM_001362561.1 NP_001349490.1 Accepted alive Link to Nucleotide Sequence:NM_001362561.1Link to Protein Sequence:NP_001349490.1Re-query CCDS DB by Nucleotide ID:NM_001362561Re-query CCDS DB by Protein ID:NP_001349490Link to BLAST:NP_001349490.1
Original member Current member NCBI NM_001362563.1 NP_001349492.1 Accepted alive Link to Nucleotide Sequence:NM_001362563.1Link to Protein Sequence:NP_001349492.1Re-query CCDS DB by Nucleotide ID:NM_001362563Re-query CCDS DB by Protein ID:NP_001349492Link to BLAST:NP_001349492.1
Original member Current member NCBI NM_007622.4 NP_031648.1 Accepted alive Link to Nucleotide Sequence:NM_007622.4Link to Protein Sequence:NP_031648.1Re-query CCDS DB by Nucleotide ID:NM_007622Re-query CCDS DB by Protein ID:NP_031648Link to BLAST:NP_031648.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349489.1 185 P83917 185 100% 0 0
NP_001349490.1 185 P83917 185 100% 0 0
NP_001349492.1 185 P83917 185 100% 0 0
NP_031648.1 185 P83917 185 100% 0 0

Chromosomal Locations for CCDS 25303.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 96800808 96800947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96801429 96801606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96802728 96802822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 96806616 96806760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (558 nt):
ATGGGGAAAAAGCAAAACAAGAAGAAAGTGGAGGAGGTACTAGAAGAAGAGGAAGAGGAATATGTGGTGG
AAAAAGTTCTTGATCGGCGAGTTGTCAAGGGCAAGGTGGAATATCTTCTAAAGTGGAAGGGTTTCTCAGA
TGAGGACAACACTTGGGAGCCAGAAGAGAATCTGGATTGCCCTGACCTTATTGCTGAGTTTCTACAGTCA
CAGAAAACAGCTCATGAGACAGATAAGTCAGAGGGAGGCAAGCGCAAAGCTGATTCTGATTCTGAAGATA
AAGGAGAGGAAAGCAAACCAAAGAAGAAGAAAGAAGAGTCAGAAAAGCCACGAGGCTTTGCCCGGGGTTT
GGAGCCAGAGCGGATTATTGGAGCTACTGACTCCAGTGGAGAGCTCATGTTCCTGATGAAATGGAAAAAC
TCTGATGAGGCTGACCTGGTCCCTGCCAAGGAAGCCAATGTCAAGTGCCCACAGGTTGTCATATCCTTCT
ATGAGGAAAGGCTAACGTGGCATTCCTACCCCTCAGAGGATGATGACAAAAAAGACGACAAGAATTAG

Translation (185 aa):
MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS
QKTAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWKN
SDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDKKDDKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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