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Report for CCDS54134.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
54134.1 |
Public |
Homo sapiens |
17 |
TMUB2 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:79089](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:54134.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:79089](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 17 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 54134.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000538716.7 |
ENSP00000444565.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000538716.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000444565.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000538716](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000444565](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000587989.1 |
ENSP00000466971.1 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000587989.1](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000466971.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000587989](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000466971](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001076674.3 |
NP_001070142.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001076674.3](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001070142.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001076674](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001070142](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001070142.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001353177.2 |
NP_001340106.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001353177.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001340106.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001353177](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001340106](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001340106.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001353181.2 |
NP_001340110.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001353181.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001340110.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001353181](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001340110](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001340110.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001353184.2 |
NP_001340113.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001353184.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001340113.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001353184](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001340113](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001340113.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 54134.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (966 nt): ATGATTTCACGTCATCTTCAAAACAACCTCATGAGCGTGGACCCTGCCAGCAGCCAGGCCATGGAGCTCT CTGATGTCACCCTCATTGAGGGTGTGGGTAATGAGGTGATGGTGGTGGCAGGTGTGGTGGTGCTGATTCT AGCCTTGGTCCTAGCTTGGCTCTCTACCTACGTAGCAGACAGCGGTAGCAACCAGCTCCTGGGCGCTATT GTGTCAGCAGGCGACACATCCGTCCTCCACCTGGGGCATGTGGACCACCTGGTGGCAGGCCAAGGCAACC CCGAGCCAACTGAACTCCCCCATCCATCAGAGGGTAATGATGAGAAGGCTGAAGAGGCGGGTGAAGGTCG GGGAGACTCCACTGGGGAGGCTGGAGCTGGGGGTGGTGTTGAGCCCAGCCTTGAGCATCTCCTTGACATC CAAGGCCTGCCCAAAAGACAAGCAGGTGCAGGCAGCAGCAGTCCAGAGGCCCCCCTGAGATCTGAGGATA GCACCTGCCTCCCTCCCAGCCCTGGCCTCATCACTGTGCGGCTCAAATTCCTCAATGATACCGAGGAGCT GGCTGTGGCTAGGCCAGAGGATACCGTGGGTGCCCTGAAGAGCAAATACTTCCCTGGACAAGAAAGCCAG ATGAAACTGATCTACCAGGGCCGCCTGCTACAAGACCCAGCCCGCACACTGCGTTCTCTGAACATTACCG ACAACTGTGTGATTCACTGCCACCGCTCACCCCCAGGGTCAGCTGTTCCAGGCCCCTCAGCCTCCTTGGC CCCCTCGGCCACTGAGCCACCCAGCCTTGGTGTCAATGTGGGCAGCCTCATGGTGCCTGTCTTTGTGGTG CTGTTGGGTGTGGTCTGGTACTTCCGAATCAATTACCGCCAATTCTTCACAGCACCTGCCACTGTCTCCC TGGTGGGAGTCACCGTCTTCTTCAGCTTCCTAGTATTTGGGATGTATGGACGATAA
Translation (321 aa): MISRHLQNNLMSVDPASSQAMELSDVTLIEGVGNEVMVVAGVVVLILALVLAWLSTYVADSGSNQLLGAI VSAGDTSVLHLGHVDHLVAGQGNPEPTELPHPSEGNDEKAEEAGEGRGDSTGEAGAGGGVEPSLEHLLDI QGLPKRQAGAGSSSPEAPLRSEDSTCLPPSPGLITVRLKFLNDTEELAVARPEDTVGALKSKYFPGQESQ MKLIYQGRLLQDPARTLRSLNITDNCVIHCHRSPPGSAVPGPSASLAPSATEPPSLGVNVGSLMVPVFVV LLGVVWYFRINYRQFFTAPATVSLVGVTVFFSFLVFGMYGR
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