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Report for CCDS55224.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
55224.1 Public Homo sapiens 8 TACC1 24 110 108 CCDS HistoryNCBI Gene:6867Re-query CCDS DB by CCDS ID:55224.1Re-query CCDS DB by GeneID:6867See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 55224.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000520615.5 ENSP00000428450.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000520615.5Link to Ensembl Protein Viewer:ENSP00000428450.1Re-query CCDS DB by Nucleotide ID:ENST00000520615Re-query CCDS DB by Protein ID:ENSP00000428450
Original member Current member NCBI NM_001146216.3 NP_001139688.1 Accepted alive Link to Nucleotide Sequence:NM_001146216.3Link to Protein Sequence:NP_001139688.1Re-query CCDS DB by Nucleotide ID:NM_001146216Re-query CCDS DB by Protein ID:NP_001139688Link to BLAST:NP_001139688.1
Original member Current member NCBI NM_001352789.2 NP_001339718.1 Accepted alive Link to Nucleotide Sequence:NM_001352789.2Link to Protein Sequence:NP_001339718.1Re-query CCDS DB by Nucleotide ID:NM_001352789Re-query CCDS DB by Protein ID:NP_001339718Link to BLAST:NP_001339718.1
Original member Current member NCBI NM_001352790.2 NP_001339719.1 Accepted alive Link to Nucleotide Sequence:NM_001352790.2Link to Protein Sequence:NP_001339719.1Re-query CCDS DB by Nucleotide ID:NM_001352790Re-query CCDS DB by Protein ID:NP_001339719Link to BLAST:NP_001339719.1
Original member Current member NCBI NM_001352791.1 NP_001339720.1 Accepted alive Link to Nucleotide Sequence:NM_001352791.1Link to Protein Sequence:NP_001339720.1Re-query CCDS DB by Nucleotide ID:NM_001352791Re-query CCDS DB by Protein ID:NP_001339720Link to BLAST:NP_001339720.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139688.1 610 O75410-3 610 100% 0 0
NP_001339718.1 610 O75410-3 610 100% 0 0
NP_001339719.1 610 O75410-3 610 100% 0 0
NP_001339720.1 610 O75410-3 610 100% 0 0

Chromosomal Locations for CCDS 55224.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 38819830 38820635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38825308 38825368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38827168 38827375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38831125 38831177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38836162 38836287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38838470 38838546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38840224 38840267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38842287 38842447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38843289 38843395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38846699 38846819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 38847955 38848023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1833 nt):
ATGACAGAAGGCAGCATGGGGGTCACCCTCGAGGCCTCCGCAGAAGCTGATCTAAAAGCTGGCAACTCCT
GTCCAGAGCTTGTGCCCAGCAGAAGAAGCAAGCTGAGAAAGCCCAAGCCTGTCCCCCTGAGGAAGAAAGC
AATTGGAGGAGAGTTCTCAGACACCAACGCTGCTGTGGAGGGCACACCTCTCCCCAAGGCATCCTATCAC
TTCAGTCCTGAAGAGTTGGATGAGAACACAAGTCCTTTGCTAGGAGATGCCAGGTTCCAGAAGTCTCCCC
CTGACCTTAAAGAAACTCCCGGCACTCTCAGTAGTGACACCAACGACTCAGGGGTTGAGCTGGGGGAGGA
GTCGAGGAGCTCACCTCTCAAGCTTGAGTTTGATTTCACAGAAGATACAGGAAACATAGAGGCCAGGAAA
GCCCTTCCAAGGAAGCTTGGCAGGAAACTGGGTAGCACACTGACTCCCAAGATACAAAAAGATGGCATCA
GTAAGTCAGCAGGTTTAGAACAGCCTACAGACCCAGTGGCACGAGACGGGCCTCTCTCCCAAACATCTTC
CAAGCCAGATCCTAGTCAGTGGGAAAGCCCCAGCTTCAACCCCTTTGGGAGCCACTCTGTTCTGCAGAAC
TCCCCACCCCTCTCTTCTGAGGGCTCCTACCACTTTGACCCAGATAACTTTGACGAATCCATGGATCCCT
TTAAACCAACTACGACCTTAACAAGCAGTGACTTTTGTTCTCCCACTGGTAATCACGTTAATGAAATCTT
AGAATCACCCAAGAAGGCAAAGTCGCGTTTAATAACGAGTGGCTGTAAGGTGAAGAAGCATGAAACTCAG
TCTCTCGCCCTGGATGCATGTTCTCGGGATGAAGGGGCAGTGATCTCCCAGATTTCAGACATTTCTAATA
GGGATGGCCATGCTACTGATGAGGAGAAACTGGCATCCACGTCATGTGGTCAGAAATCAGCTGGTGCCGA
GGTGAAAGGTGAGCCAGAGGAAGACCTGGAGTACTTTGAATGTTCCAATGTTCCTGTGTCTACCATAAAT
CATGCGTTTTCATCCTCAGAAGCAGGCATAGAGAAGGAGACGTGCCAGAAGATGGAAGAAGACGGGTCCA
CTGTGCTTGGGCTGCTGGAGTCCTCTGCAGAGAAGGCCCCTGTGTCGGTGTCCTGTGGAGGTGAGAGCCC
CCTGGATGGGATCTGCCTCAGCGAATCAGACAAGACAGCCGTGCTCACCTTAATAAGAGAAGAGATAATT
ACTAAAGAGATTGAAGCAAATGAATGGAAGAAGAAATACGAAGAGACCCGGCAAGAAGTTTTGGAGATGA
GGAAAATTGTAGCTGAATATGAAAAGACTATTGCTCAAATGATTGAAGATGAACAAAGGACAAGTATGAC
CTCTCAGAAGAGCTTCCAGCAACTGACCATGGAGAAGGAACAGGCCCTGGCTGACCTTAACTCTGTGGAA
AGGTCCCTTTCTGATCTCTTCAGGAGATATGAGAACCTGAAAGGTGTTCTGGAAGGGTTCAAGAAGAATG
AAGAAGCCTTGAAGAAATGTGCTCAGGATTACTTAGCCAGAGTTAAACAAGAGGAGCAGCGATACCAGGC
CCTGAAAATCCACGCAGAAGAGAAACTGGACAAAGCCAATGAAGAGATTGCTCAGGTTCGAACAAAAGCA
AAGGCTGAGAGTGCAGCTCTCCATGCTGGACTCCGCAAAGAGCAGATGAAGGTGGAGTCCCTGGAAAGGG
CCCTGCAGCAGAAGAACCAAGAAATTGAAGAACTGACAAAAATCTGTGATGAGCTGATTGCAAAGCTGGG
AAAGACTGACTGA

Translation (610 aa):
MTEGSMGVTLEASAEADLKAGNSCPELVPSRRSKLRKPKPVPLRKKAIGGEFSDTNAAVEGTPLPKASYH
FSPEELDENTSPLLGDARFQKSPPDLKETPGTLSSDTNDSGVELGEESRSSPLKLEFDFTEDTGNIEARK
ALPRKLGRKLGSTLTPKIQKDGISKSAGLEQPTDPVARDGPLSQTSSKPDPSQWESPSFNPFGSHSVLQN
SPPLSSEGSYHFDPDNFDESMDPFKPTTTLTSSDFCSPTGNHVNEILESPKKAKSRLITSGCKVKKHETQ
SLALDACSRDEGAVISQISDISNRDGHATDEEKLASTSCGQKSAGAEVKGEPEEDLEYFECSNVPVSTIN
HAFSSSEAGIEKETCQKMEEDGSTVLGLLESSAEKAPVSVSCGGESPLDGICLSESDKTAVLTLIREEII
TKEIEANEWKKKYEETRQEVLEMRKIVAEYEKTIAQMIEDEQRTSMTSQKSFQQLTMEKEQALADLNSVE
RSLSDLFRRYENLKGVLEGFKKNEEALKKCAQDYLARVKQEEQRYQALKIHAEEKLDKANEEIAQVRTKA
KAESAALHAGLRKEQMKVESLERALQQKNQEIEELTKICDELIAKLGKTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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