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Report for CCDS423.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
423.1 Public Homo sapiens 1 AIRIM 24 110 108 CCDS HistoryNCBI Gene:54955Re-query CCDS DB by CCDS ID:423.1Re-query CCDS DB by GeneID:54955See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 423.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000358011.8 ENSP00000350704.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000358011.8Link to Ensembl Protein Viewer:ENSP00000350704.4Re-query CCDS DB by Nucleotide ID:ENST00000358011Re-query CCDS DB by Protein ID:ENSP00000350704
Original member Current member EBI ENST00000486637.2 ENSP00000476779.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000486637.2Link to Ensembl Protein Viewer:ENSP00000476779.2Re-query CCDS DB by Nucleotide ID:ENST00000486637Re-query CCDS DB by Protein ID:ENSP00000476779
Original member Current member EBI ENST00000464085.5 ENSP00000477159.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000464085.5Link to Ensembl Protein Viewer:ENSP00000477159.1Re-query CCDS DB by Nucleotide ID:ENST00000464085Re-query CCDS DB by Protein ID:ENSP00000477159
Original member Current member NCBI NM_001350765.2 NP_001337694.1 Accepted alive Link to Nucleotide Sequence:NM_001350765.2Link to Protein Sequence:NP_001337694.1Re-query CCDS DB by Nucleotide ID:NM_001350765Re-query CCDS DB by Protein ID:NP_001337694Link to BLAST:NP_001337694.1
Original member Current member NCBI NM_001350766.2 NP_001337695.1 Accepted alive Link to Nucleotide Sequence:NM_001350766.2Link to Protein Sequence:NP_001337695.1Re-query CCDS DB by Nucleotide ID:NM_001350766Re-query CCDS DB by Protein ID:NP_001337695Link to BLAST:NP_001337695.1
Original member Current member NCBI NM_001350767.2 NP_001337696.1 Accepted alive Link to Nucleotide Sequence:NM_001350767.2Link to Protein Sequence:NP_001337696.1Re-query CCDS DB by Nucleotide ID:NM_001350767Re-query CCDS DB by Protein ID:NP_001337696Link to BLAST:NP_001337696.1
Original member Current member NCBI NM_001350768.2 NP_001337697.1 Accepted alive Link to Nucleotide Sequence:NM_001350768.2Link to Protein Sequence:NP_001337697.1Re-query CCDS DB by Nucleotide ID:NM_001350768Re-query CCDS DB by Protein ID:NP_001337697Link to BLAST:NP_001337697.1
Original member Current member NCBI NM_001350769.2 NP_001337698.1 Accepted alive Link to Nucleotide Sequence:NM_001350769.2Link to Protein Sequence:NP_001337698.1Re-query CCDS DB by Nucleotide ID:NM_001350769Re-query CCDS DB by Protein ID:NP_001337698Link to BLAST:NP_001337698.1
Original member Current member NCBI NM_001350770.2 NP_001337699.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001350770.2Link to Protein Sequence:NP_001337699.1Re-query CCDS DB by Nucleotide ID:NM_001350770Re-query CCDS DB by Protein ID:NP_001337699Link to BLAST:NP_001337699.1
Original member Current member NCBI NM_001350771.2 NP_001337700.1 Accepted alive Link to Nucleotide Sequence:NM_001350771.2Link to Protein Sequence:NP_001337700.1Re-query CCDS DB by Nucleotide ID:NM_001350771Re-query CCDS DB by Protein ID:NP_001337700Link to BLAST:NP_001337700.1
Original member Current member NCBI NM_017850.3 NP_060320.1 Accepted alive Link to Nucleotide Sequence:NM_017850.3Link to Protein Sequence:NP_060320.1Re-query CCDS DB by Nucleotide ID:NM_017850Re-query CCDS DB by Protein ID:NP_060320Link to BLAST:NP_060320.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001337694.1 203 Q9NX04-1 203 100% 0 0
NP_001337695.1 203 Q9NX04-1 203 100% 0 0
NP_001337696.1 203 Q9NX04-1 203 100% 0 0
NP_001337697.1 203 Q9NX04-1 203 100% 0 0
NP_001337698.1 203 Q9NX04-1 203 100% 0 0
NP_001337699.1 203 Q9NX04-1 203 100% 0 0
NP_001337700.1 203 Q9NX04-1 203 100% 0 0
NP_060320.1 203 Q9NX04-1 203 100% 0 0

Chromosomal Locations for CCDS 423.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 37683123 37683160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37683319 37683437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37686273 37686452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 37689606 37689880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGACTCAAGACCGGCCTCTGCTTGCCGTGCAGGAGGCGCTGAAGAAGTGCTTCCCCGTGGTGGAGGAGC
AGCAGGGCCTGTGGCAGAGTGCCCTGCGGGACTGCCAGCCCCTCCTGTCCTCCCTCAGCAACCTGGCGGA
ACAGCTGCAGGCCGCACAGAACCTGCGGTTTGAGGATGTGCCGGCGCTTCGGGCCTTCCCAGATTTAAAA
GAGCGGCTGAGGCGTAAGCAGCTGGTGGCTGGTGACATCGTCCTGGACAAGCTAGGGGAAAGGCTAGCCA
TCCTCCTCAAGGTGCGAGACATGGTCAGCAGCCATGTGGAGCGAGTGTTTCAGATCTATGAGCAACACGC
AGACACAGTTGGCATTGATGCTGTCCTGCAGCCTTCAGCAGTGAGCCCCTCTGTGGCTGACATGTTGGAA
TGGTTGCAGGATATTGAGAGACATTATCGAAAGTCGTACCTGAAGAGAAAGTATCTTCTTTCGTCTATCC
AGTGGGGAGACTTGGCAAACATACAAGCTTTGCCCAAGGCCTGGGACCGAATTTCAAAAGACGAACACCA
AGATCTTGTACAAGATATCCTATTGAATGTTTCCTTCTTCCTGGAAGAGTAA

Translation (203 aa):
MTQDRPLLAVQEALKKCFPVVEEQQGLWQSALRDCQPLLSSLSNLAEQLQAAQNLRFEDVPALRAFPDLK
ERLRRKQLVAGDIVLDKLGERLAILLKVRDMVSSHVERVFQIYEQHADTVGIDAVLQPSAVSPSVADMLE
WLQDIERHYRKSYLKRKYLLSSIQWGDLANIQALPKAWDRISKDEHQDLVQDILLNVSFFLEE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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