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Report for CCDS227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
227.1 Public Homo sapiens 1 C1QC 24 110 108 CCDS HistoryNCBI Gene:714Re-query CCDS DB by CCDS ID:227.1Re-query CCDS DB by GeneID:714See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 227.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374637.1 ENSP00000363768.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374637.1Link to Ensembl Protein Viewer:ENSP00000363768.1Re-query CCDS DB by Nucleotide ID:ENST00000374637Re-query CCDS DB by Protein ID:ENSP00000363768
Original member Current member EBI ENST00000374639.7 ENSP00000363770.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374639.7Link to Ensembl Protein Viewer:ENSP00000363770.3Re-query CCDS DB by Nucleotide ID:ENST00000374639Re-query CCDS DB by Protein ID:ENSP00000363770
Original member Current member EBI ENST00000374640.9 ENSP00000363771.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000374640.9Link to Ensembl Protein Viewer:ENSP00000363771.4Re-query CCDS DB by Nucleotide ID:ENST00000374640Re-query CCDS DB by Protein ID:ENSP00000363771
Original member Current member EBI ENST00000695751.1 ENSP00000512144.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000695751.1Link to Ensembl Protein Viewer:ENSP00000512144.1Re-query CCDS DB by Nucleotide ID:ENST00000695751Re-query CCDS DB by Protein ID:ENSP00000512144
Original member Current member NCBI NM_001114101.3 NP_001107573.1 Accepted alive Link to Nucleotide Sequence:NM_001114101.3Link to Protein Sequence:NP_001107573.1Re-query CCDS DB by Nucleotide ID:NM_001114101Re-query CCDS DB by Protein ID:NP_001107573Link to BLAST:NP_001107573.1
Original member Current member NCBI NM_001347619.2 NP_001334548.1 Accepted alive Link to Nucleotide Sequence:NM_001347619.2Link to Protein Sequence:NP_001334548.1Re-query CCDS DB by Nucleotide ID:NM_001347619Re-query CCDS DB by Protein ID:NP_001334548Link to BLAST:NP_001334548.1
Original member Current member NCBI NM_172369.5 NP_758957.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_172369.5Link to Protein Sequence:NP_758957.2Re-query CCDS DB by Nucleotide ID:NM_172369Re-query CCDS DB by Protein ID:NP_758957Link to BLAST:NP_758957.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107573.1 245 P02747 245 100% 0 0
NP_001334548.1 245 P02747 245 100% 0 0
NP_758957.2 245 P02747 245 100% 0 0

Chromosomal Locations for CCDS 227.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 22644024 22644204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 22647227 22647783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGGACGTGGGGCCCAGCTCCCTGCCCCACCTTGGGCTGAAGCTGCTGCTGCTCCTGCTGCTGCTGCCCC
TCAGGGGCCAAGCCAACACAGGCTGCTACGGGATCCCAGGGATGCCCGGCCTGCCCGGGGCACCAGGGAA
GGATGGGTACGACGGACTGCCGGGGCCCAAGGGGGAGCCAGGAATCCCAGCCATTCCCGGGATCCGAGGA
CCCAAAGGGCAGAAGGGAGAACCCGGCTTACCCGGCCATCCTGGGAAAAATGGCCCCATGGGACCCCCTG
GGATGCCAGGGGTGCCCGGCCCCATGGGCATCCCTGGAGAGCCAGGTGAGGAGGGCAGATACAAGCAGAA
ATTCCAGTCAGTGTTCACGGTCACTCGGCAGACCCACCAGCCCCCTGCACCCAACAGCCTGATCAGATTC
AACGCGGTCCTCACCAACCCGCAGGGAGATTATGACACGAGCACTGGCAAGTTCACCTGCAAAGTCCCCG
GCCTCTACTACTTTGTCTACCACGCGTCGCATACAGCCAACCTGTGCGTGCTGCTGTACCGCAGCGGCGT
CAAAGTGGTCACCTTCTGTGGCCACACGTCCAAAACCAATCAGGTCAACTCGGGCGGTGTGCTGCTGAGG
TTGCAGGTGGGCGAGGAGGTGTGGCTGGCTGTCAATGACTACTACGACATGGTGGGCATCCAGGGCTCTG
ACAGCGTCTTCTCCGGCTTCCTGCTCTTCCCCGACTAG

Translation (245 aa):
MDVGPSSLPHLGLKLLLLLLLLPLRGQANTGCYGIPGMPGLPGAPGKDGYDGLPGPKGEPGIPAIPGIRG
PKGQKGEPGLPGHPGKNGPMGPPGMPGVPGPMGIPGEPGEEGRYKQKFQSVFTVTRQTHQPPAPNSLIRF
NAVLTNPQGDYDTSTGKFTCKVPGLYYFVYHASHTANLCVLLYRSGVKVVTFCGHTSKTNQVNSGGVLLR
LQVGEEVWLAVNDYYDMVGIQGSDSVFSGFLLFPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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