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Report for CCDS87608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
87608.1 Public Homo sapiens 8 SNTG1 24 110 108 CCDS HistoryNCBI Gene:54212Re-query CCDS DB by CCDS ID:87608.1Re-query CCDS DB by GeneID:54212See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 87608.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000647273.1 ENSP00000494713.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000647273.1Link to Ensembl Protein Viewer:ENSP00000494713.1Re-query CCDS DB by Nucleotide ID:ENST00000647273Re-query CCDS DB by Protein ID:ENSP00000494713
Original member Current member NCBI NM_001321775.2 NP_001308704.1 Accepted alive Link to Nucleotide Sequence:NM_001321775.2Link to Protein Sequence:NP_001308704.1Re-query CCDS DB by Nucleotide ID:NM_001321775Re-query CCDS DB by Protein ID:NP_001308704Link to BLAST:NP_001308704.1
Original member Current member NCBI NM_001321776.2 NP_001308705.1 Accepted alive Link to Nucleotide Sequence:NM_001321776.2Link to Protein Sequence:NP_001308705.1Re-query CCDS DB by Nucleotide ID:NM_001321776Re-query CCDS DB by Protein ID:NP_001308705Link to BLAST:NP_001308705.1
Original member Current member NCBI NM_001321777.2 NP_001308706.1 Accepted alive Link to Nucleotide Sequence:NM_001321777.2Link to Protein Sequence:NP_001308706.1Re-query CCDS DB by Nucleotide ID:NM_001321777Re-query CCDS DB by Protein ID:NP_001308706Link to BLAST:NP_001308706.1
Original member Current member NCBI NM_001321778.2 NP_001308707.1 Accepted alive Link to Nucleotide Sequence:NM_001321778.2Link to Protein Sequence:NP_001308707.1Re-query CCDS DB by Nucleotide ID:NM_001321778Re-query CCDS DB by Protein ID:NP_001308707Link to BLAST:NP_001308707.1

Chromosomal Locations for CCDS 87608.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 50394239 50394265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50402210 50402344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50438543 50438599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50449668 50449725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50450556 50450599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50450688 50450729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50502778 50502880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50530177 50530259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50536678 50536808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50553050 50553179 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50590879 50590917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50656909 50657025 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50658592 50658663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50704600 50704752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 50708886 50709002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1308 nt):
ATGGATTTCAGAACCGCCTGTGAGGAGACAAAGACAGGAATTTGTTTGCTGCAGGATGGTAACCAGGAGC
CTTTCAAAGTGCGGCTGCACCTAGCCAAAGACATTTTGATGATCCAGGAACAGGATGTGATATGTGTGTC
TGGTGAGCCTTTCTATTCTGGTGAAAGAACGGTGACCATCAGAAGACAAACAGTAGGAGGATTTGGATTA
AGCATAAAGGGAGGAGCAGAACATAACATTCCAGTTGTCGTTTCAAAAATCTCCAAGGAACAAAGAGCGG
AACTTTCAGGACTACTTTTTATTGGAGATGCAATTCTACAGATAAATGGCATTAATGTGAGAAAATGTAG
ACATGAAGAAGTGGTTCAGGTTCTTCGGAATGCTGGAGAAGAAGTGACTCTAACAGTGTCATTTTTAAAA
AGAGCACCTGCTTTCCTCAAACTCCCATTGAATGAAGATTGTGCATGTGCTCCAAGTGACCAGAGCAGTG
GCACCTCCTCTCCTCTCTGTGACAGTGGCTTACATCTCAACTACCATCCCAACAATACAGACACATTATC
ATGCTCGTCGTGGCCGACGTCTCCAGGCTTGAGGTGGGAGAAGCGATGGTGCGACCTCAGACTGATCCCT
CTACTTCATTCGCGCTTCTCTCAGTATGTGCCCGGCACAGATTTGAGTCGGCAGAATGCCTTTCAAGTCA
TTGCTGTGGATGGGGTCTGCACTGGGATTATTCAGTGCCTCTCTGCTGAAGACTGCGTTGACTGGCTACA
AGCAATAGCAACTAACATTTCAAATCTCACAAAGCACAATATTAAAAAAATCAACAGAAACTTTCCTGTA
AACCAGCAGATTGTCTACATGGGCTGGTGTGAAGCCCGGGAGCAAGACCCCCTCCAGGACAGAGTGTACT
CCCCGACCTTCCTGGCCCTGAGGGGCTCATGTCTCTACAAGTTTCTGGCACCTCCAGTGACCACCTGGGA
CTGGACGAGAGCAGAGAAAACATTCTCAGTTTATGAGATTATGTGCAAGATCCTCAAGGACAGTGACCTG
CTGGACCGACGGAAACAGTGCTTCACCGTGCAGTCTGAGTCTGGGGAGGACCTGTACTTCTCAGTGGAGC
TGGAAAGTGACCTCGCCCAGTGGGAAAGAGCCTTCCAGACAGCAACCTTTCTAGAAGTAGAACGGATACA
GTGCAAGACCTATGCATGTGTGCTAGAAAGTCATCTAATGGGACTCACAATTGATTTCAGCACAGGATTT
ATCTGCTTTGATGCTGCAACAAAGGTAATGTGTTCAGGTCAGCTCTGA

Translation (435 aa):
MDFRTACEETKTGICLLQDGNQEPFKVRLHLAKDILMIQEQDVICVSGEPFYSGERTVTIRRQTVGGFGL
SIKGGAEHNIPVVVSKISKEQRAELSGLLFIGDAILQINGINVRKCRHEEVVQVLRNAGEEVTLTVSFLK
RAPAFLKLPLNEDCACAPSDQSSGTSSPLCDSGLHLNYHPNNTDTLSCSSWPTSPGLRWEKRWCDLRLIP
LLHSRFSQYVPGTDLSRQNAFQVIAVDGVCTGIIQCLSAEDCVDWLQAIATNISNLTKHNIKKINRNFPV
NQQIVYMGWCEAREQDPLQDRVYSPTFLALRGSCLYKFLAPPVTTWDWTRAEKTFSVYEIMCKILKDSDL
LDRRKQCFTVQSESGEDLYFSVELESDLAQWERAFQTATFLEVERIQCKTYACVLESHLMGLTIDFSTGF
ICFDAATKVMCSGQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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