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Report for CCDS78067.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
78067.1 Public Homo sapiens 5 PCDHB6 24 110 108 CCDS HistoryNCBI Gene:56130Re-query CCDS DB by CCDS ID:78067.1Re-query CCDS DB by GeneID:56130See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 18, NCBI annotation release 107, Ensembl annotation release 79

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 78067.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000622991.1 ENSP00000485034.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000622991.1Link to Ensembl Protein Viewer:ENSP00000485034.1Re-query CCDS DB by Nucleotide ID:ENST00000622991Re-query CCDS DB by Protein ID:ENSP00000485034
Original member Current member NCBI NM_001303145.2 NP_001290074.1 Accepted alive Link to Nucleotide Sequence:NM_001303145.2Link to Protein Sequence:NP_001290074.1Re-query CCDS DB by Nucleotide ID:NM_001303145Re-query CCDS DB by Protein ID:NP_001290074Link to BLAST:NP_001290074.1

Chromosomal Locations for CCDS 78067.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 141150666 141152642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1977 nt):
ATGCTCCTGAAAATATCAGAAATTACTATGCCAGGAAAGATATTTCCTTTGAAAATGGCACACGATTTAG
ACACCGGCAGCAACGGCCTTCAGAGGTACACAATCAGCTCCAACCCTCACTTCCACGTTCTCACCCGCAA
TCGCAGCGAAGGCAGGAAGTTCCCGGAGCTGGTGCTAGACAAACCGTTGGACCGCGAGGAGCAGCCCCAA
CTCAGGCTAACGCTGATCGCGCTGGATGGCGGGTCTCCGCCCCGGTCAGGGACCTCCGAGATTCAGATCC
AGGTTTTGGACATCAATGACAACGTCCCCGAGTTTGCTCAGGAGCTCTATGAAGCACAAGTCCCTGAGAA
CAACCCCCTCGGCTCTCTGGTTATTACCGTCTCAGCCAGAGATTTAGATGCAGGATCGTTTGGGAAGGTA
TCTTACGCCCTGTTTCAAGTCGATGACGTCAACCAACCCTTCGAAATAAACGCAATCACAGGAGAAATTC
GGCTGAGAAAGGCTTTGGATTTTGAGGAAATTCAGTCTTATGACGTGGATGTTGAGGCTACAGATGGTGG
AGGCCTATCAGGAAAATGCTCTTTAGTCGTCAGGGTCCTGGACGTGAATGACAATGCCCCTGAACTCACC
ATGTCGTTCTTCATCAGCCTCATCCCAGAAAACTTACCAGAGATCACAGTGGCAGTTTTCAGTGTTTCAG
ATGCAGACTCTGGACATAACCAACAGGTTATTTGTTCAATAGAGAACAATCTCCCCTTTCTACTAAGACC
TTCCGTGGAGAATTTCTACACCCTGGTAACAGAAGGCGCGCTGGACAGAGAGAGCAGAGCCGAGTACAAC
ATCACTATCACGGTCACTGATTTGGGGACACCAAGGCTGAAAACCCAGCAGAGCATAACTGTGCAGGTCT
CCGACGTCAATGACAACGCCCCCGCCTTCACCCAAACCTCCTACACCCTGTTCGTCCGCGAGAACAACAG
CCCCGCCCTGCACATCGGCAGCGTCAGCGCCACAGACAGAGACTCAGGCATCAACGCCCAGGTCACCTAC
TCGCTGCTGCCGCCCCAGGACCCGCACCTGCCCCTCTCTTCCCTGGTCTCCATCAACGCGGACAACGGCC
ACCTGTTTGCCCTCAGGTCGCTGGACTACGAGGCCCTGCAGTCTTTCGAGTTCCGCGTGGGCGCCACAGA
CCGCGGCTCCCCGGCGTTGAGCAGCGAGGCGCTGGTGCGCTTGCTGGTGCTGGACGCCAACGACAACTCG
CCCTTCGTGTTGTACCCGCTGCAGAACGGCTCCGCGCCCTGCACCGAGCTGGTGCCCCGGGCGGCCGAGC
CGGGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTGTCGTACCA
GCTGCTCAAGGCCACGGAGCTCGGTCTGTTCGGCGTGTGGGCGCACAATGGCGAGGTGCGCACCGCCAGG
CTGCTGAGCGAGCGAGACGCAGCCAAGCACAGGCTGGTGGTGCTTGTCAAGGACAATGGCGAGCCTCCGC
GCTCGGCCACCGCCACGCTGCACGTGCTCCTGGTGGACGGCTTCTCCCAGCCCTACCTGCCTCTCCCTGA
GGCGGCCCCGGCCCAAGCCCAGGCCGACTCTCTCACCGTCTACCTGGTGGTGGCGTTGGCCTCGGTGTCG
TCGCTCTTCCTCTTTTCGGTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCTCGG
TGGGTCGCTACTCGGTGCCCGAGGGTCCCTTTCCAGGGCATCTGGTGGATGTGAGCGGCACCGGGACCCT
ATCCCAGAGCTACCAGTACAAGGTGTGTCTGACGGGAGGCTCAGAAACAAATGAGTTCAAGTTCCTGAAG
CCGATTATGCCCAACTTCCCTCCTCAGGGCACTGAGAGAGAAATGGAAGAAACCCCCACCTCTCGGAATA
GCTTCCCGTTCAGTTAA

Translation (658 aa):
MLLKISEITMPGKIFPLKMAHDLDTGSNGLQRYTISSNPHFHVLTRNRSEGRKFPELVLDKPLDREEQPQ
LRLTLIALDGGSPPRSGTSEIQIQVLDINDNVPEFAQELYEAQVPENNPLGSLVITVSARDLDAGSFGKV
SYALFQVDDVNQPFEINAITGEIRLRKALDFEEIQSYDVDVEATDGGGLSGKCSLVVRVLDVNDNAPELT
MSFFISLIPENLPEITVAVFSVSDADSGHNQQVICSIENNLPFLLRPSVENFYTLVTEGALDRESRAEYN
ITITVTDLGTPRLKTQQSITVQVSDVNDNAPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGINAQVTY
SLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQSFEFRVGATDRGSPALSSEALVRLLVLDANDNS
PFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWLSYQLLKATELGLFGVWAHNGEVRTAR
LLSERDAAKHRLVVLVKDNGEPPRSATATLHVLLVDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVS
SLFLFSVLLFVAVRLCRRSRAASVGRYSVPEGPFPGHLVDVSGTGTLSQSYQYKVCLTGGSETNEFKFLK
PIMPNFPPQGTEREMEETPTSRNSFPFS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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