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Report for CCDS70676.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70676.1 Public Mus musculus 16 Naa60 23 108 98 CCDS HistoryNCBI Gene:74763Re-query CCDS DB by CCDS ID:70676.1Re-query CCDS DB by GeneID:74763See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)


Attributes
Nonsense-mediated decay (NMD) candidate

Sequence IDs included in CCDS 70676.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000176625.7 ENSMUSP00000134768.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000176625.7Link to Ensembl Protein Viewer:ENSMUSP00000134768.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000176625Re-query CCDS DB by Protein ID:ENSMUSP00000134768
Original member Current member NCBI NM_001290689.1 NP_001277618.1 Accepted alive Link to Nucleotide Sequence:NM_001290689.1Link to Protein Sequence:NP_001277618.1Re-query CCDS DB by Nucleotide ID:NM_001290689Re-query CCDS DB by Protein ID:NP_001277618Link to BLAST:NP_001277618.1

Chromosomal Locations for CCDS 70676.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 3897336 3897380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3899872 3899968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3900643 3900877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 3901783 3901939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGATAGTAGCTGAAATAAAGAATAGGACCAAAATCCATAAAGAGGATGGAGATATTCTAGCCTCCAGCT
TCTCTGTGGATACACAAGTTGCATACATCCTCAGTCTGGGAGTGGTGAAAGAGTTCAGGAAACACGGCAT
AGGTTCCCTTTTACTAGAAAGTTTAAAGGATCATATTTCAACCACCGCCCAGGACCACTGCAAAGCCATC
TACCTGCATGTTCTCACCACCAACAATACAGCAATAAACTTCTATGAAAACAGAGACTTTAGGCAGCATC
ACTATCTGCCCTACTACTACTCCATTCGAGGGGTCCTCAAAGATGGCTTCACCTATGTCCTCTACATCAA
TGGCGGCCACCCTCCCTGGACCATTTTAGACTACATCCAGCACCTGGGCTCAGCACTAGCCAACCTGAGC
CCCTGCTCCATCCCACACAGGATCTACCGCCAGGCCCACAGCCTGCTCTGCAGCTTTCTGCCATGGTCCA
GCATTTCCACCAAAGGTGGCATAGAGTACAGCCGTACCATGTAA

Translation (177 aa):
MIVAEIKNRTKIHKEDGDILASSFSVDTQVAYILSLGVVKEFRKHGIGSLLLESLKDHISTTAQDHCKAI
YLHVLTTNNTAINFYENRDFRQHHYLPYYYSIRGVLKDGFTYVLYINGGHPPWTILDYIQHLGSALANLS
PCSIPHRIYRQAHSLLCSFLPWSSISTKGGIEYSRTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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