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Report for CCDS70999.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
70999.1 Public Mus musculus 2 Sapcd2 23 108 98 CCDS HistoryNCBI Gene:72080Re-query CCDS DB by CCDS ID:70999.1Re-query CCDS DB by GeneID:72080See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 70999.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114293.8 ENSMUSP00000109932.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114293.8Link to Ensembl Protein Viewer:ENSMUSP00000109932.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114293Re-query CCDS DB by Protein ID:ENSMUSP00000109932
Original member Current member NCBI NM_001290407.1 NP_001277336.1 Accepted alive Link to Nucleotide Sequence:NM_001290407.1Link to Protein Sequence:NP_001277336.1Re-query CCDS DB by Nucleotide ID:NM_001290407Re-query CCDS DB by Protein ID:NP_001277336Link to BLAST:NP_001277336.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277336.1 391 Q9D818-1 391 100% 0 0

Chromosomal Locations for CCDS 70999.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25372431 25372998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25374952 25375064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25375685 25375831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25375968 25376075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25376164 25376274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25376352 25376480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1176 nt):
ATGGCCGTGGCAGCGATGGCCGAGCGTGGCCGCCTATCGCACGCTGCGCCCGCTCCTAGTACAGAGGGGC
TACCGCGAGCCTTTCTCCAGAGCCTGCGCACCCTCTTCGACATCCTGGACGACCGGCAACGCGGCTACGT
GCACCTGCGGGAGATCGAGTCCCGCTGGCAAGGTGCAGACGCACGCGAGCTGCCGTGCGGCGTGCTCGAG
GGCCTGCGCCAGGTGGCCCCGGCCAATGGCTACCTGACCTTCGAGCGTTTCGTAGCGGGCTTGCGCACCT
CGCTGCTGAAAGCCGACGGCGGCCAGCGGGATCAGGCACGCGTCGCGGCCCGGCCTGGGGACCAGTCGTC
CCTGCAGCAGCGCCTGATGTTCGCACCGGCCGATGAGCCGCGGACTGTCCTGGAGAGAAAGCCTCTGCCT
CTGAGTGCGTGCCCTGCTTCTGGTGGCCCCAGTGGCACCTCCCGGAACCCTGAGCTGTTATGTGTCCCGG
TGGAGGCGGCGTCCTGCCCCACAGAGACCGAGCGGCCCCTGAGCAAGGCGCTGGAGCAAATCCCCAGCGC
GGATTTGGGTGCAGCAGCCTGTAAGACCCTGGGCAAGGGCACAGGTGAAGCCCGGCAGGCTCCACGGGCC
CGAGGCGAGCGTCGAAGGCATACCATCACCAATGGTGTGGACTGCAGCCTGTTGAAGCAGATGAAGGAGT
TAGACCAGGAACAGGAGGTGCTTCTGCAGGGCCTGGAGATGATGGCACGGGGCCGAGACTGGTACCAGCA
GCAGCTGCAGCGTGTGCAGGAACGTCAGCGCCGCCTGAGCCAGAGCAGAGCTGCTGCAGACTTTGGGGCT
GAAGGAAGCCCCCGCCCTCTGGGGAGGTTGCTGCCCAAAGTACAGGAGGTGGCCCGGTGCCTGGGGGAGC
TGTTGACTGCAGCCTGCTCTGGCAGAGCTCTGCCTTCGTCCTCTTTAGGGCCCCTGGGCCCTCCCTCACC
CTCAACTCCAGTCTGGCAGCAACAGACCATCCTCATGCTGAAAGAACAGAACCGGCTTCTCACTCAGGAG
GTGACTGATAAGAGTGAGCGCATCACGCAGCTGGAGCAGGAGAAGTCTGCACTCATCAAGCAGCTGTTTG
AGGCCCGAGCGCTCAGCCAGCAGGATTCGGGACCTCTGGACTCCACTTTCATCTAG

Translation (391 aa):
MAVAAMAERGRLSHAAPAPSTEGLPRAFLQSLRTLFDILDDRQRGYVHLREIESRWQGADARELPCGVLE
GLRQVAPANGYLTFERFVAGLRTSLLKADGGQRDQARVAARPGDQSSLQQRLMFAPADEPRTVLERKPLP
LSACPASGGPSGTSRNPELLCVPVEAASCPTETERPLSKALEQIPSADLGAAACKTLGKGTGEARQAPRA
RGERRRHTITNGVDCSLLKQMKELDQEQEVLLQGLEMMARGRDWYQQQLQRVQERQRRLSQSRAAADFGA
EGSPRPLGRLLPKVQEVARCLGELLTAACSGRALPSSSLGPLGPPSPSTPVWQQQTILMLKEQNRLLTQE
VTDKSERITQLEQEKSALIKQLFEARALSQQDSGPLDSTFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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