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Report for CCDS67143.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
67143.1 Public Homo sapiens 17 PHF23 24 110 108 CCDS HistoryNCBI Gene:79142Re-query CCDS DB by CCDS ID:67143.1Re-query CCDS DB by GeneID:79142See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 15, NCBI annotation release 105, Ensembl annotation release 74

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 67143.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000454255.6 ENSP00000414607.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000454255.6Link to Ensembl Protein Viewer:ENSP00000414607.2Re-query CCDS DB by Nucleotide ID:ENST00000454255Re-query CCDS DB by Protein ID:ENSP00000414607
Original member Current member NCBI NM_001284518.2 NP_001271447.1 Accepted alive Link to Nucleotide Sequence:NM_001284518.2Link to Protein Sequence:NP_001271447.1Re-query CCDS DB by Nucleotide ID:NM_001284518Re-query CCDS DB by Protein ID:NP_001271447Link to BLAST:NP_001271447.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001271447.1 399 Q9BUL5-4 399 100% 0 0

Chromosomal Locations for CCDS 67143.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 7235626 7235840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7235930 7236767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7237385 7237477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7237629 7237660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 7238786 7238807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1200 nt):
ATGCCCGGTGATTGTCGGAGAGATCCACCTCCGACCCTTAAGCCAGAGACTCAGCCACCAGAGAAACGGC
GGAGAACAATTGAGGATTTCAACAAATTCTGCAGTTTTGTTTTGGCATATGCTGGTTACATTCCCCCTAG
CAAAGAGGAAAGTGACTGGCCAGCCTCTGGCTCCAGCTCTCCATTGCGAGGAGAGAGTGCGGCCGACAGT
GATGGCTGGGACTCGGCCCCCTCAGATCTTCGAACCATCCAGACTTTTGTTAAGAAAGCAAAGTCATCCA
AGAGAAGGGCAGCTCAAGCAGGTCCCACCCAGCCAGGACCCCCAAGGTCCACTTTCTCTCGTCTGCAGGC
CCCCGACAGTGCTACCTTGCTTGAGAAGATGAAGCTCAAGGACTCTCTCTTTGATCTGGATGGGCCCAAA
GTGGCATCTCCTTTGTCCCCCACATCCCTGACACATACCTCCCGGCCCCCTGCTGCTCTTACCCCCGTGC
CCCTTTCCCAGGGGGACCTCTCCCATCCTCCTCGAAAGAAGGACCGAAAGAACCGAAAGTTGGGGCCAGG
AGCTGGGGCTGGCTTTGGGGTGCTTCGGAGGCCTCGGCCAACTCCTGGGGATGGGGAAAAGAGATCTCGA
ATCAAGAAGAGCAAGAAGCGGAAGTTAAAAAAGGCAGAACGGGGGGATAGACTCCCACCTCCTGGGCCTC
CCCAGGCACCCCCCAGTGATACAGACTCTGAAGAGGAGGAGGAAGAGGAGGAAGAGGAAGAAGAAGAAGA
GATGGCAACAGTGGTAGGGGGTGAAGCCCCAGTCCCTGTGCTGCCAACACCCCCTGAGGCTCCTAGGCCC
CCTGCCACAGTGCACCCTGAAGGAGTCCCTCCTGCTGACAGTGAAAGCAAGGAGGTGGGCAGCACTGAAA
CAAGCCAAGATGGAGATGCCAGCTCCAGTGAAGGCGAGATGCGGGTCATGGACGAGGACATCATGGTAGA
ATCAGGTGATGACTCATGGGATCTGATCACATGTTACTGTCGAAAGCCCTTTGCAGGGCGGCCCATGATT
GAGTGCAGCCTGTGTGGGACGTGGATCCACCTCTCCTGTGCTAAGATTAAGAAGACCAACGTCCCCGACT
TCTTTTATTGCCAGAAATGCAAGGAACTGAGGCCAGAGGCCCGGCGGTTAGGGGGGCCTCCCAAATCTGG
AGAGCCCTGA

Translation (399 aa):
MPGDCRRDPPPTLKPETQPPEKRRRTIEDFNKFCSFVLAYAGYIPPSKEESDWPASGSSSPLRGESAADS
DGWDSAPSDLRTIQTFVKKAKSSKRRAAQAGPTQPGPPRSTFSRLQAPDSATLLEKMKLKDSLFDLDGPK
VASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPRKKDRKNRKLGPGAGAGFGVLRRPRPTPGDGEKRSR
IKKSKKRKLKKAERGDRLPPPGPPQAPPSDTDSEEEEEEEEEEEEEEMATVVGGEAPVPVLPTPPEAPRP
PATVHPEGVPPADSESKEVGSTETSQDGDASSSEGEMRVMDEDIMVESGDDSWDLITCYCRKPFAGRPMI
ECSLCGTWIHLSCAKIKKTNVPDFFYCQKCKELRPEARRLGGPPKSGEP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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